Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2171 ATGGGGCCTCAGGAAGTTTCCCAGTCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCCGTCAGCGGTAGTGACTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGAGGAGGGTTCGTGTTATTCTCAGTTCTTTTCGACCAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCGGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGAGTTTCGTCGGTTTCGGATCGTTCCGTGGAGGTTGAAAATGAAAATGGGATAACTGAAATTAAGGTGCATTCAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCATGCAAGGATGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAATAAGACATGTGAGATTTGCCATTCCATTGCACGGAACATTCTCGGACCAAACGAGGTTGAGTTAACAGAGCAATCTAACGAATCCAACAACGCCTCCTCGACAACTACAGTTGCTGCATCAATTCCCTCATCAGACAGCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTTTACTCGCTTGTATGGAAGAAAGTAGTTTCGAAACAGTGGAAAATCCGATTGAGGAACTTGCAGAATTTGCAGCTGCAAAAGACCCTCCAGCGAATTGCCTACAGAGTGTCCATAACTTCATATAG 756 46.3 MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDAEEGSCYSQFFSTNGGSYDEYRFAFVSRPEVGVVSDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNESNNASSTTTVAASIPSSDSQSFWRGHRFLNFLLACMEESSFETVENPIEELAEFAAAKDPPANCLQSVHNFI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36177429 36179723 - CePI673135_10g021710.1 Cec10g2171 215086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2171 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 166 IPR013083 -
Cec10g2171 251 CDD RING_CH-C4HC3_MARCH 107 159 - -
Cec10g2171 251 Pfam RING-variant domain 107 158 IPR011016 GO:0008270(InterPro)
Cec10g2171 251 PANTHER ZINC FINGER, RING-CH-TYPE 36 215 - -
Cec10g2171 251 SUPERFAMILY RING/U-box 104 161 - -
Cec10g2171 251 SMART ringv_2 106 159 IPR011016 GO:0008270(InterPro)
Cec10g2171 251 MobiDBLite consensus disorder prediction 1 25 - -
Cec10g2171 251 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0309 Cec-Chr4:12090274 Cec10g2171 Cec-Chr10:36177429 9.90E-08 dispersed
Cec04g2090 Cec-Chr4:38871210 Cec10g2171 Cec-Chr10:36177429 2.10E-22 dispersed
Cec10g2171 Cec-Chr10:36177429 Cec11g0670 Cec-Chr11:7427420 4.90E-45 wgd
Cec10g2171 Cec-Chr10:36177429 Cec03g0099 Cec-Chr3:1048323 5.60E-33 wgd
Cec10g2171 Cec-Chr10:36177429 Cec04g0877 Cec-Chr4:28513308 1.90E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2171 - - - 0.0