Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2198 ATGTTTTTGTCGTCGTCTCTGATGATCTTGGCCTTTTCAAGTATACTTTGTTCAACAGATGAATTGGATCGCTCTGCTCTACTTGACTTGAAAGGTAGAGTACTGGATGACCCACTAAAAATCATGAGTTCTTGGAATGATTCCACGCATTTCTGTGAATGGATGGGTGTTACTTGCAACTCCAGCATTAGAAGAGTAGTGGCTTTGGACTTGGAAGCTGGAGATCTAACTGGTTCTCTACCTCCTTCCTTGGGAAATCTCACTTACCTAACTAAAATCAGTTTGGGAGTCAACAAATTGTATGGCCCAATTCCCCAAGAGTTGGGTCGTTTACTTCAATTACGTTTCCTCAATTTATCCTACAATAACTTTGGCGGTGAGTTTCCAGCAAATATAAGTCATTGCAGGGAGTTGGTTGTTTTGGAGATTAGTGGCAATGAATTTGTAGGCCAAATTCCACACCAATTGTCCACATTGACCAAGTTGGAACGATTCATGTTGGGCATCAACAATCTGAGTGGAACTATTCCACCTTGGGTAGGAAATTTTTCTTCGATATTGGCTTTGTCATTTGGGCGGAACAACTTTCATGGAAGCATTCCAAGTGAAATAGGACGTCTATCTAAAATGGAATTCTTCTCAGTTATTTCAAATAAATTGACAGGTACAATGCCAATTTCAATCTACAATATCAGTTCTTTAACTCTCTTTCATTTTACTGAAAATCAATTGGAAGGAAGTCTACCACCAAATATTGGATTTACTCTTCCCAATCTTCAGACATTTGCTGGTGGTATTAATAATTTTGATGGGCCTATTCCAAAGTCCTTGACTAATATCTCTAGCCTTCAAATCTTAGATTTTCCAAATAACAATCTTGTTGGAATGATACCTGATGACATAGGGAGATTAAAACACCTTCAGCGTCTAAATTTTGGATCAAATAGTCTTGGAAGTGGAAAAATTGGTGATTTAAATTTTATTAATTCCTTGCTTAATTGTACTACGCTAAGGATTTTGGGTTTAAATACGAACCATTTTGGAGGACCATTACCTTCGTCCATTGCCAACCTTTCAAACCAGCTACAAGCTATAACCTTGGGTGATAATATGTTAAGTGGAAGCATTCCTTTAGGGATTACAAACTTGATTAACTTGCAAGTTCTTGCAATGGAAGGCAACATCATGAATGGTAGTATCCCTCCCAATATAGGGAGCCTTAAAAATTTAGTGCTTTTGTACTTGGGTGGAAACGGATTAACTGGCCCAATCCCTTCCTCCATTGGTAACTTAACTTCACTCACCAACCTCTACTTGAGTTATAACAAACACGACGGACGTATACCAACAAGCTTAGGGGAATGCAAAACCCTCCTATCTCTTCAGCTATCTAGTAACAACCTAACCGGCTCCATACCAAAACAAATCTTTGGAATCCTTTCCCTTTCCATCACTTTGGCCTTAGATCATAACTCATTTACTGGTCCATTGCCAAATGAAGTGGGTGAGTTGCTTAGTTTATTAGAACTGGATGTATCAGAAAACAAATTATCAGGTGATATTCCTAGCAACCTCGGAAAATGTACTAGCATGGAACGATTGTATCTTGGGGGAAACCAATTTAGGGGAACAATCCCTCAATCTTTACAAACTTTAAATAGCCTTGTACAACTAAATTTATCAAGAAACAACTTGACAGGTTCGATTCCCCAATTTCTTGGTAAACTTCTTTCGCTCCTGTATCTCGATTTATCCCACAATAACTTTGTAGGAAAAGTGCCAGAAGAAGGAGTTTTTTCCAACTCAACCACGTTTTCTATCCTGGGGAATAACAATCTGTGTGATGGTTTACAAGAATTACATCTACCTCCATGCATGTCTAATCAAACACATTCATCAAAGTTACTAATCCCTATAGCATCTGCAATCGCATTCGCTGTTTTTTTGGTCAGCTTCTTTTTTGTGTGTTTTCTCCTTAACAAGTCGAGGAAGGATACTTCAACTTCATCTTCATCCTTTGCAAAGGAGTTTCTACCACAAATTTCTTACTTGGAACTTAGTAAAGCAACCCACGGATTCTCTATGGATAATTTCATTGGTTCTGGTAGTTTTGGCACTGTGTATAAAGGTTTTCTTTCAAATGATGGATCTATTGTTGCAATTAAAGTTTTGAATCTCCAACAACAAGGTGCTTCCCAGAGTTTTGTTGATGAATGCAACACCCTCTCAAACATACGACATCGAAATCTCCTCAAGATCATAACTTCTTGCTCAAGTATTGATGTACACGGCAATGAATTTAAAGCTCTAGTTTTCAATTTTATGTCAAATGGAAATCTTGATAGTTGGCTTCATCCAACAAACCAAGGGCACAACCAAAGGAGGTTAAGTCTCATCCAAAGATTGAACATTGCCATTGATATTGCATATGGATTAGACTATCTCCATAATCATTGTGAAACTCCTATTGTTCATTGTGATTTGAAGCCTAGCAACATACTCCTTGACGAAGATATGATAGCTCATGTAGGAGACTTTGGATTAGCTAGATTCATGTTAGAAAGATCAAGTGATCAAATATCTTTTAGTCAAACCATGTCACTTGCACTCAAGGGTTCTATTGGATATATCCCACCAGAGTACGGTACGGGTAGTAGAATTTCCATCGAAGGAGATATCTTCAGCTATGGGATACTGCTACTAGAGATGATCATCGGAAAAAGACCCACCGACAACACCTTTGGCAATGATGTAGATATTCATTTGTTCACTACAAGGGCACTGTCTCAGGATGCCTTGAGCATAATCGACTCTTCAATACTATTTGAAGAAACACATCATGAAGAAGATGAGGAAGACATGGTACAAGTAATAGCGATGAAGAGCGAAGAAGATCAAAGAGAAATCGTACCAAGATGGATGGAAGAGTGTGTAATCTCGATAATGAGAATTGGCTTGACATGCTCTTTCAAAGCACCCAGTGACAGAACGTCAATGAATATTGTCGTTAATAATTTGCAAGCAATTAAAAGCTCCTTTCTCGAATTTAAAAAGGCACACTAA 3063 38.13 MFLSSSLMILAFSSILCSTDELDRSALLDLKGRVLDDPLKIMSSWNDSTHFCEWMGVTCNSSIRRVVALDLEAGDLTGSLPPSLGNLTYLTKISLGVNKLYGPIPQELGRLLQLRFLNLSYNNFGGEFPANISHCRELVVLEISGNEFVGQIPHQLSTLTKLERFMLGINNLSGTIPPWVGNFSSILALSFGRNNFHGSIPSEIGRLSKMEFFSVISNKLTGTMPISIYNISSLTLFHFTENQLEGSLPPNIGFTLPNLQTFAGGINNFDGPIPKSLTNISSLQILDFPNNNLVGMIPDDIGRLKHLQRLNFGSNSLGSGKIGDLNFINSLLNCTTLRILGLNTNHFGGPLPSSIANLSNQLQAITLGDNMLSGSIPLGITNLINLQVLAMEGNIMNGSIPPNIGSLKNLVLLYLGGNGLTGPIPSSIGNLTSLTNLYLSYNKHDGRIPTSLGECKTLLSLQLSSNNLTGSIPKQIFGILSLSITLALDHNSFTGPLPNEVGELLSLLELDVSENKLSGDIPSNLGKCTSMERLYLGGNQFRGTIPQSLQTLNSLVQLNLSRNNLTGSIPQFLGKLLSLLYLDLSHNNFVGKVPEEGVFSNSTTFSILGNNNLCDGLQELHLPPCMSNQTHSSKLLIPIASAIAFAVFLVSFFFVCFLLNKSRKDTSTSSSSFAKEFLPQISYLELSKATHGFSMDNFIGSGSFGTVYKGFLSNDGSIVAIKVLNLQQQGASQSFVDECNTLSNIRHRNLLKIITSCSSIDVHGNEFKALVFNFMSNGNLDSWLHPTNQGHNQRRLSLIQRLNIAIDIAYGLDYLHNHCETPIVHCDLKPSNILLDEDMIAHVGDFGLARFMLERSSDQISFSQTMSLALKGSIGYIPPEYGTGSRISIEGDIFSYGILLLEMIIGKRPTDNTFGNDVDIHLFTTRALSQDALSIIDSSILFEETHHEEDEEDMVQVIAMKSEEDQREIVPRWMEECVISIMRIGLTCSFKAPSDRTSMNIVVNNLQAIKSSFLEFKKAH 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36432889 36436051 + CePI673135_10g021980.1 Cec10g2198 215113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2198 1020 Pfam Leucine rich repeat N-terminal domain 23 60 IPR013210 -
Cec10g2198 1020 SMART LRR_typ_2 280 304 IPR003591 -
Cec10g2198 1020 SMART LRR_typ_2 504 528 IPR003591 -
Cec10g2198 1020 SMART LRR_typ_2 576 601 IPR003591 -
Cec10g2198 1020 SMART LRR_typ_2 552 575 IPR003591 -
Cec10g2198 1020 SMART LRR_typ_2 111 135 IPR003591 -
Cec10g2198 1020 SMART LRR_typ_2 159 183 IPR003591 -
Cec10g2198 1020 SMART LRR_typ_2 407 431 IPR003591 -
Cec10g2198 1020 Pfam Leucine Rich Repeat 554 576 IPR001611 GO:0005515(InterPro)
Cec10g2198 1020 Pfam Leucine Rich Repeat 578 595 IPR001611 GO:0005515(InterPro)
Cec10g2198 1020 Pfam Leucine Rich Repeat 282 304 IPR001611 GO:0005515(InterPro)
Cec10g2198 1020 Pfam Leucine Rich Repeat 409 431 IPR001611 GO:0005515(InterPro)
Cec10g2198 1020 Pfam Leucine Rich Repeat 506 528 IPR001611 GO:0005515(InterPro)
Cec10g2198 1020 Pfam Leucine Rich Repeat 113 135 IPR001611 GO:0005515(InterPro)
Cec10g2198 1020 Pfam Leucine Rich Repeat 433 455 IPR001611 GO:0005515(InterPro)
Cec10g2198 1020 Pfam Leucine Rich Repeat 531 552 IPR001611 GO:0005515(InterPro)
Cec10g2198 1020 ProSitePatterns Protein kinases ATP-binding region signature. 699 722 IPR017441 GO:0005524(InterPro)
Cec10g2198 1020 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 775 1019 - -
Cec10g2198 1020 SUPERFAMILY L domain-like 361 615 - -
Cec10g2198 1020 SUPERFAMILY L domain-like 17 261 - -
Cec10g2198 1020 Gene3D Phosphorylase Kinase; domain 1 655 774 - -
Cec10g2198 1020 PANTHER OS04G0122200 PROTEIN 36 1009 IPR051809 -
Cec10g2198 1020 SMART serkin_6 693 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g2198 1020 ProSiteProfiles Protein kinase domain profile. 693 1014 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g2198 1020 Gene3D Ribonuclease Inhibitor 323 627 IPR032675 -
Cec10g2198 1020 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 60 327 - -
Cec10g2198 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec10g2198 1020 FunFam LRR receptor-like serine/threonine-protein kinase EFR 664 774 - -
Cec10g2198 1020 SUPERFAMILY L domain-like 267 396 - -
Cec10g2198 1020 SUPERFAMILY Protein kinase-like (PK-like) 667 1006 IPR011009 -
Cec10g2198 1020 FunFam LRR receptor-like serine/threonine-protein kinase EFR 328 631 - -
Cec10g2198 1020 Gene3D Transferase(Phosphotransferase) domain 1 775 1018 - -
Cec10g2198 1020 Pfam Protein kinase domain 696 925 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g2198 1020 Gene3D Ribonuclease Inhibitor 171 322 IPR032675 -
Cec10g2198 1020 Gene3D Ribonuclease Inhibitor 20 170 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1275 Cec-Chr1:23203252 Cec10g2198 Cec-Chr10:36432889 5.90E-190 dispersed
Cec10g2196 Cec-Chr10:36416680 Cec10g2198 Cec-Chr10:36432889 3.70E-53 dispersed
Cec10g2198 Cec-Chr10:36432889 Cec11g0646 Cec-Chr11:7094618 4.40E-100 dispersed
Cec10g2197 Cec-Chr10:36421314 Cec10g2198 Cec-Chr10:36432889 9.50E-220 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72358 PF00069 Pkinase 2.40E-40 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2198 - - - 0.0