Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec10g2211 | ATGCATTACTCCCTCCCACCTTCATTCCCAATTCCCATTTCAGATCTCCTTTCAGTTTCCGCTATGGAAGAAATTCCCTACACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACTCCGCTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCTAATGAAACTTGGGAAGTGGTTCTTCCAGTAGAAGAAGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTTCATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTAAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACAGTCTTTGAAGTTGTGACAGACCGGAAGCCTGCCAAACAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAATCAACCCTAAACATGCCGAACACAGTTATGAGGAGGATGTTGATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTTTGGATTGGCTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTATCAAACAATATAAATGTCCTTCTTGCAGCATGAAGAAGGGCAGACAGTAG | 789 | 45.25 | MHYSLPPSFPIPISDLLSVSAMEEIPYTTPKTVEEIFKDYSARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTDRKPAKQKPSVDSGSRSQGSAKRSNDGQVKINPKHAEHSYEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ | 262 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 36517318 | 36519691 | + | CePI673135_10g022110.1 | Cec10g2211 | 215126 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec10g2211 | 262 | CDD | PHD_AL_plant | 208 | 258 | IPR044104 | - | |
Cec10g2211 | 262 | ProSiteProfiles | Zinc finger PHD-type profile. | 206 | 258 | IPR019787 | - | |
Cec10g2211 | 262 | Pfam | PHD-finger | 209 | 255 | IPR019787 | - | |
Cec10g2211 | 262 | MobiDBLite | consensus disorder prediction | 185 | 199 | - | - | |
Cec10g2211 | 262 | SUPERFAMILY | FYVE/PHD zinc finger | 197 | 260 | IPR011011 | - | |
Cec10g2211 | 262 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 256 | IPR013083 | - | |
Cec10g2211 | 262 | PANTHER | CPG BINDING PROTEIN | 29 | 261 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cec10g2211 | 262 | Pfam | Alfin | 32 | 157 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cec10g2211 | 262 | MobiDBLite | consensus disorder prediction | 167 | 184 | - | - | |
Cec10g2211 | 262 | SMART | PHD_3 | 208 | 256 | IPR001965 | - | |
Cec10g2211 | 262 | ProSitePatterns | Zinc finger PHD-type signature. | 209 | 255 | IPR019786 | - | |
Cec10g2211 | 262 | FunFam | PHD finger alfin-like protein | 201 | 257 | - | - | |
Cec10g2211 | 262 | MobiDBLite | consensus disorder prediction | 160 | 199 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec10g0733 | Cec-Chr10:10707031 | Cec10g2211 | Cec-Chr10:36517318 | 2.00E-81 | dispersed | |
Cec10g2211 | Cec-Chr10:36517318 | Cec11g0170 | Cec-Chr11:1873021 | 1.30E-85 | dispersed | |
Cec07g0477 | Cec-Chr7:5122799 | Cec10g2211 | Cec-Chr10:36517318 | 5.80E-50 | transposed | |
Cec10g2211 | Cec-Chr10:36517318 | Cec07g0476 | Cec-Chr7:5112297 | 9.70E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30467 | PF12165 | Alfin | 7.80E-67 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec10g2211 | K26274 | - | csv:101211970 | 454.521 |