Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2211 ATGCATTACTCCCTCCCACCTTCATTCCCAATTCCCATTTCAGATCTCCTTTCAGTTTCCGCTATGGAAGAAATTCCCTACACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACTCCGCTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCTAATGAAACTTGGGAAGTGGTTCTTCCAGTAGAAGAAGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTTCATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTAAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACAGTCTTTGAAGTTGTGACAGACCGGAAGCCTGCCAAACAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAATCAACCCTAAACATGCCGAACACAGTTATGAGGAGGATGTTGATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTTTGGATTGGCTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTATCAAACAATATAAATGTCCTTCTTGCAGCATGAAGAAGGGCAGACAGTAG 789 45.25 MHYSLPPSFPIPISDLLSVSAMEEIPYTTPKTVEEIFKDYSARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTDRKPAKQKPSVDSGSRSQGSAKRSNDGQVKINPKHAEHSYEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36517318 36519691 + CePI673135_10g022110.1 Cec10g2211 215126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2211 262 CDD PHD_AL_plant 208 258 IPR044104 -
Cec10g2211 262 ProSiteProfiles Zinc finger PHD-type profile. 206 258 IPR019787 -
Cec10g2211 262 Pfam PHD-finger 209 255 IPR019787 -
Cec10g2211 262 MobiDBLite consensus disorder prediction 185 199 - -
Cec10g2211 262 SUPERFAMILY FYVE/PHD zinc finger 197 260 IPR011011 -
Cec10g2211 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 256 IPR013083 -
Cec10g2211 262 PANTHER CPG BINDING PROTEIN 29 261 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cec10g2211 262 Pfam Alfin 32 157 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cec10g2211 262 MobiDBLite consensus disorder prediction 167 184 - -
Cec10g2211 262 SMART PHD_3 208 256 IPR001965 -
Cec10g2211 262 ProSitePatterns Zinc finger PHD-type signature. 209 255 IPR019786 -
Cec10g2211 262 FunFam PHD finger alfin-like protein 201 257 - -
Cec10g2211 262 MobiDBLite consensus disorder prediction 160 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0733 Cec-Chr10:10707031 Cec10g2211 Cec-Chr10:36517318 2.00E-81 dispersed
Cec10g2211 Cec-Chr10:36517318 Cec11g0170 Cec-Chr11:1873021 1.30E-85 dispersed
Cec07g0477 Cec-Chr7:5122799 Cec10g2211 Cec-Chr10:36517318 5.80E-50 transposed
Cec10g2211 Cec-Chr10:36517318 Cec07g0476 Cec-Chr7:5112297 9.70E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30467 PF12165 Alfin 7.80E-67 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2211 K26274 - csv:101211970 454.521