Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2211 ATGCATTACTCCCTCCCACCTTCATTCCCAATTCCCATTTCAGATCTCCTTTCAGTTTCCGCTATGGAAGAAATTCCCTACACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACTCCGCTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCTAATGAAACTTGGGAAGTGGTTCTTCCAGTAGAAGAAGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTTCATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTAAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACAGTCTTTGAAGTTGTGACAGACCGGAAGCCTGCCAAACAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAATCAACCCTAAACATGCCGAACACAGTTATGAGGAGGATGTTGATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTTTGGATTGGCTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTATCAAACAATATAAATGTCCTTCTTGCAGCATGAAGAAGGGCAGACAGTAG 789 45.25 MHYSLPPSFPIPISDLLSVSAMEEIPYTTPKTVEEIFKDYSARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTDRKPAKQKPSVDSGSRSQGSAKRSNDGQVKINPKHAEHSYEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36517318 36519691 + CePI673135_10g022110.1 Cec10g2211 215126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2211 262 CDD PHD_AL_plant 208 258 IPR044104 -
Cec10g2211 262 ProSiteProfiles Zinc finger PHD-type profile. 206 258 IPR019787 -
Cec10g2211 262 Pfam PHD-finger 209 255 IPR019787 -
Cec10g2211 262 MobiDBLite consensus disorder prediction 185 199 - -
Cec10g2211 262 SUPERFAMILY FYVE/PHD zinc finger 197 260 IPR011011 -
Cec10g2211 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 256 IPR013083 -
Cec10g2211 262 PANTHER CPG BINDING PROTEIN 29 261 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cec10g2211 262 Pfam Alfin 32 157 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cec10g2211 262 MobiDBLite consensus disorder prediction 167 184 - -
Cec10g2211 262 SMART PHD_3 208 256 IPR001965 -
Cec10g2211 262 ProSitePatterns Zinc finger PHD-type signature. 209 255 IPR019786 -
Cec10g2211 262 FunFam PHD finger alfin-like protein 201 257 - -
Cec10g2211 262 MobiDBLite consensus disorder prediction 160 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2211 K26274 - - csv:101211970 454.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0733 Cec-Chr10:10707031 Cec10g2211 Cec-Chr10:36517318 2.00E-81 dispersed
Cec10g2211 Cec-Chr10:36517318 Cec11g0170 Cec-Chr11:1873021 1.30E-85 dispersed
Cec07g0477 Cec-Chr7:5122799 Cec10g2211 Cec-Chr10:36517318 5.80E-50 transposed
Cec10g2211 Cec-Chr10:36517318 Cec07g0476 Cec-Chr7:5112297 9.70E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g250 . . . . . . . . Cmo06g00221 Cmo14g00058 . . . . . . Cpe08g01225 . . . . . . . . . . . . . . Cone3ag0428 Cone10ag0390 . . . . . Cme04g02724 . . . . . . Bma01g01801 . . . . Cma06g00227 Cma14g00064 Car06g00201 Car14g00046 Cpe03g00051 . Bhi11g01831 Tan08g2139 Cmetu08g0029 Lac10g3221 Hepe05g0086 . . Cla10g02093 Cam10g2172 Cec10g2211 Cco10g2197 Clacu10g2174 Cmu10g2914 Cre10g2315 Lsi03g02216 Csa03g03069 Chy04g02257 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g0733 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.1 3.8e-114 407.9
Cec08g1020 . 9 250 Alfin-like Transcription Factor Family AT1G14510 71.1 2.8e-96 348.6
Cec11g0170 . 62 301 Alfin-like Transcription Factor Family AT1G14510 69.7 2.6e-94 342.0
Cec09g0082 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 3.2e-92 335.1
Cec10g2211 . 22 259 Alfin-like Transcription Factor Family AT1G14510 59.3 2.4e-79 292.4
Cec07g0476 . 8 117 Alfin-like Transcription Factor Family AT1G14510 70.5 9.3e-44 174.1
Cec11g0170 . 54 303 Alfin-like Transcription Factor Family AT5G26210 76.0 8.1e-112 400.2
Cec08g1020 . 1 252 Alfin-like Transcription Factor Family AT5G26210 74.0 2.4e-108 388.7
Cec09g0082 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.7 3.9e-98 354.8
Cec10g0733 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.5 2.6e-94 342.0
Cec10g2211 . 30 261 Alfin-like Transcription Factor Family AT5G26210 58.1 2.4e-79 292.4
Cec07g0476 . 7 111 Alfin-like Transcription Factor Family AT5G26210 74.3 6.5e-45 177.9
Cec11g0170 . 54 303 Alfin-like Transcription Factor Family AT3G42790 70.1 4.8e-101 364.4
Cec08g1020 . 1 252 Alfin-like Transcription Factor Family AT3G42790 70.5 1.8e-100 362.5
Cec09g0082 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.1 2.7e-96 348.6
Cec10g0733 . 9 255 Alfin-like Transcription Factor Family AT3G42790 72.1 5.9e-91 330.9
Cec10g2211 . 30 261 Alfin-like Transcription Factor Family AT3G42790 58.3 2.0e-78 289.3
Cec07g0476 . 7 111 Alfin-like Transcription Factor Family AT3G42790 73.3 4.6e-43 171.8
Cec10g2211 . 28 262 Alfin-like Transcription Factor Family AT5G05610 75.4 9.1e-105 376.7
Cec08g1020 . 8 252 Alfin-like Transcription Factor Family AT5G05610 66.5 1.8e-92 335.9
Cec11g0170 . 61 303 Alfin-like Transcription Factor Family AT5G05610 65.2 5.2e-92 334.3
Cec09g0082 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.9 9.7e-91 330.1
Cec10g0733 . 9 254 Alfin-like Transcription Factor Family AT5G05610 63.2 3.0e-84 308.5
Cec07g0476 . 1 117 Alfin-like Transcription Factor Family AT5G05610 79.5 1.4e-52 203.4
Cec07g0477 . 5 127 Alfin-like Transcription Factor Family AT5G05610 75.8 1.8e-52 203.0
Cec10g2211 . 65 262 Alfin-like Transcription Factor Family AT3G11200 76.2 1.8e-86 315.8
Cec08g1020 . 44 252 Alfin-like Transcription Factor Family AT3G11200 65.6 1.9e-75 279.3
Cec09g0082 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.7 4.7e-74 274.6
Cec11g0170 . 97 303 Alfin-like Transcription Factor Family AT3G11200 64.3 1.4e-73 273.1
Cec10g0733 . 44 254 Alfin-like Transcription Factor Family AT3G11200 64.2 7.0e-70 260.8
Cec07g0477 . 5 127 Alfin-like Transcription Factor Family AT3G11200 73.0 6.2e-50 194.5
Cec07g0476 . 43 117 Alfin-like Transcription Factor Family AT3G11200 92.0 7.1e-38 154.5
Cec10g0733 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.4e-76 283.1
Cec11g0170 . 54 211 Alfin-like Transcription Factor Family AT2G02470 76.6 6.7e-66 247.7
Cec08g1020 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.4e-65 245.0
Cec09g0082 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 3.1e-63 238.8
Cec10g2211 . 22 157 Alfin-like Transcription Factor Family AT2G02470 71.7 2.7e-54 209.1
Cec07g0476 . 8 117 Alfin-like Transcription Factor Family AT2G02470 71.4 2.1e-43 172.9
Cec08g1020 . 1 167 Alfin-like Transcription Factor Family AT5G20510 77.4 2.5e-73 271.9
Cec11g0170 . 54 213 Alfin-like Transcription Factor Family AT5G20510 77.0 6.8e-71 263.8
Cec09g0082 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 3.1e-68 255.0
Cec10g0733 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.7e-67 250.4
Cec10g2211 . 29 188 Alfin-like Transcription Factor Family AT5G20510 58.6 6.0e-51 197.6
Cec07g0476 . 7 111 Alfin-like Transcription Factor Family AT5G20510 72.4 2.1e-43 172.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30467 PF12165 Alfin 7.80E-67 No_clan Cec TF