Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2236 ATGAACAACACCATCTCGCCGGGAAACATGGCCGCCGGAACCCCATCATGGCTGAACACCGGCGACAACTCTTGGCAAATTACAGCCTCCACTCTCGTCGGACTTCAGAGCATGCCTGGGCTTGTGATTCTCTACGCCAGCATCGTCAAAAAGAAATGGGCCGTTAATTCTGCGTTTATGGCGCTTTACGCCTTCGCCGCCGTTCTAATTTGTTGGGTCATCGTCGGTTACAGAATGGCGTTTGGCGATCAGTTGATTCCTCTGTGGGGAAAAGGAATTCCAGCTGTGTCTCAAAGTTACTTAATAAACCAAGCCAATATCCCTGAGAGTGGCTACATAAGCAACAATGGAAGTGTAACGCCAAGAATTGAACCCAATATTCCGATGGCTTCGCTTGTGTATTTCCAATTTACTTTTGCTGCGATTACTGTGATTTTACTTGGTGGGTCTGTTCTTGCAAGAATGAACATCAAAGCCTGGATGGCGTTTGTTCCTCTTTGGGTAATTTTCTCATACACCGTCGGAGCATACAGCGTTTGGGGCGGAGGGTTTCTGTTTAAATGGGGATTAATTGATTACTCCGGCGGCTATGTGATTCATCTTTCGTCTGGAATTGCTGGTTTAACAGCGGCTTATTGGGTTGGGCCGAGGATAAAGAGTGACAGAGAGAGGTTTCCCCCGAATAACGTACTGCTGATGTTGGCCGGAGCGGGGCTGTTGTGGATGGGGTGGTCGGGATTTAACGGCGGAGCGCCGCACTCGGCGAACGTGGTGGCGTCGATAGCTGTGCTGAATACGAACGTGAGTGCGGCGACGAGTCTGCTGGTTTGGACCATATTGGATGTGTTTTACTTTGGGAAGCCATCGGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTTACTCCTGGCGCTGGAGTTGTGCAGACGTGGGCGGCTATCATAATGGGAGTTCTAGCTGGGAGTGTTCCATGGCTATCCATGATGGTTCTTCATAAAAAATTGAGTTTCTTGCAGAAGGCTGATGACACGCTTGGTGTATTTCACACGCACGCAGTGGCGGGATTGATGGGCGGGCTTTTAACTGGGCTTTTGGCGGAGCCCACTCTCTGCGATCTTTACCTACCGGTCACCGGCACACGCGGCGCCTTCTACGGCGAGAACGGCGGCGTTCAGTTCCTGAAACAACTGGCCGGATCCACCTTCATCATAGGATGGAACATCGTGTCAACCACCATAATCCTCCTCTTTATCCGGCTGTTTATGCCCTTAAGAATGCCCGATGAGGAACTCATGATCGGCGACGACGCCGTCCACGGCGAGGAGGCTTATGCTCTTTGGGGCGACGGCGAGAAATTCGATCCTAGACGGCACGGCAATGCGGCCGCCGCCAATATGGAAGAGGGAACTGGCTCGCCTTATATCAATGGTGCTCGAGGTGTAATCATCGAGTTGTAA 1467 51.47 MNNTISPGNMAAGTPSWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVIVGYRMAFGDQLIPLWGKGIPAVSQSYLINQANIPESGYISNNGSVTPRIEPNIPMASLVYFQFTFAAITVILLGGSVLARMNIKAWMAFVPLWVIFSYTVGAYSVWGGGFLFKWGLIDYSGGYVIHLSSGIAGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGVLAGSVPWLSMMVLHKKLSFLQKADDTLGVFHTHAVAGLMGGLLTGLLAEPTLCDLYLPVTGTRGAFYGENGGVQFLKQLAGSTFIIGWNIVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAAANMEEGTGSPYINGARGVIIEL 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36705218 36709202 - CePI673135_10g022360.1 Cec10g2236 215151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2236 488 PRINTS Rhesus blood group protein signature 355 371 IPR002229 GO:0005886(InterPro)
Cec10g2236 488 PRINTS Rhesus blood group protein signature 136 152 IPR002229 GO:0005886(InterPro)
Cec10g2236 488 PRINTS Rhesus blood group protein signature 262 284 IPR002229 GO:0005886(InterPro)
Cec10g2236 488 PRINTS Rhesus blood group protein signature 317 335 IPR002229 GO:0005886(InterPro)
Cec10g2236 488 PRINTS Rhesus blood group protein signature 231 249 IPR002229 GO:0005886(InterPro)
Cec10g2236 488 SUPERFAMILY Ammonium transporter 17 429 - -
Cec10g2236 488 ProSitePatterns Ammonium transporters signature. 192 217 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cec10g2236 488 PANTHER AMMONIUM TRANSPORTER MEP2 15 458 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Cec10g2236 488 NCBIfam ammonium transporter 22 447 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cec10g2236 488 FunFam Ammonium transporter 8 450 - -
Cec10g2236 488 Gene3D Ammonium transporter AmtB like domains 2 450 IPR029020 -
Cec10g2236 488 Pfam Ammonium Transporter Family 25 447 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0061 Cec-Chr4:2911164 Cec10g2236 Cec-Chr10:36705218 1.70E-31 dispersed
Cec08g1348 Cec-Chr8:25397209 Cec10g2236 Cec-Chr10:36705218 8.70E-152 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2236 K03320 - csv:101207321 907.901