Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2242 ATGGGAAAAAGCCACAACCCTCTGAGTGAATTTCAGGTGCACCCACTTCAGTTCATGCAGATTCTTGCACCGAAAACAGCTGATTGGTGCTCCAAATCACCAAATATGAACAGAAAATTCAAGAACCAACAATGGAAAAGCTGTTCTTCATACCTCATTGCTCTCTTTTTTGCTCATCTTTTGGCTGTTTCCCTTCGACCAGTCACTGGCCAGATGTGGGATGGAGTGGCTGTTACACAAGGAGATTTTCAAGCTCTTCAAGCTATAAAGCACGAACTCATCGATCTAAAAGGAGCTTTGCATAGCTGGAATGGCAGCAATGGAGCTTGTTCCGGACAGTGGGCAGGAATCAAGTGTGTGAAGGGCCAGGTTATCGCTATACAGCTTCCATGGAAGGCTCTTGCTGGCCGGATTTCCAAAAGGATTGGACAGCTCCGGGAACTTCGGAAACTCAGCCTCCATGACAACATGATCTCCGGTGCGGTCCCTCGGTCCCTGGGGTTCCTTCCAAATCTCAGAGGAGTTTATCTTTTCAACAACAGATTATCAGGTTCTATTCCTCCTACAATTGGTAACCTTCCCCTTCTTCAAACTCTTGATTTGAGCAACAATTTACTCACTGGAGAAATTCCTTCTGGTCTAGCAAATTCTACCAAATTGCTTAGAGTTAATCTGAGTTACAATTCATTGTCGGGATCTATCCCAAGTAGTTTTACACAGTCGTTTTCTCTTATAATTCTTGCTCTTCAGCACAATAATATTTCTGGGACCGTCCCAGACTCTTGGGGAGGTCTTGGAAATAGAACTTGCCCACTTGGGGTTTTAACACTTGATCATAATGCTATATATGGAGCAATTCCAGCTTCTTTGAGTAAGTTGGAATGGCTTCAAGAGATTTCCATCGGGGACAATAAGATATCTGGAGCTATACCAAGTGAGATAGGCAGGCTGAAGAGACTTCGTCTTCTGGATTTGTCAAACAACGCCATTAGTGGCGGCTTCCCTTCAAGTTTCTCCAATCTCTCCTCTCTTGAGTCATTGAATGTTGAAAATAATCGCCTTGAAAGCCAGATTCCAGGAGATATTGATAGATTGCAGAATCTCTCAGTGGTCAAGCTTGGGAAGAATCGTTTTAGTGGTGAAATTCCTGCAAGTTTTGGGAACATTTCTGGTATTGACCAACTTGATTTCTCAGAAAATAACTTAACGGGACAGATTCCAACATCATTGACCCGTTTGTTGAATCTAACCTCTTTCAATGTCTCCTACAACAATCTCTCTGGCCCTGTTCCAGTTCTCCTATCGAATAAGTTCAATGCGAGCTCTTTCGTAGGGAACCTTCAACTGTGTGGTTTTAGTACTTCAACTCCATGCCTACCTGCATCCTCCCCACATAATATTACAACTCCATCAACTGAGGTACTGCAACCGCATCGCCACCGCAGACTTAGTCTGAAGGACATAATTCTGATAGCTGCTGGAGCTCTGTTGGTGCTTCTTCTTCTTCTCTGCTCAATTTTGCTCTGTTGTTTGTTATCAAAAAGAGCTGCTGCCAGAAAGAATGACAAAACAGCTGCCAAGGAAACTGCTGCGAGAGGCATCGAGAAGGCAGCACCGGGCAGCACCGATGTTGGGGCAGGTGAAGCTGGTGGAAAACTAGTTCATTTTGATGGGCCATTTGTTTTCACTGCTGATGACCTTTTGTGTGCGACTGCGGAGATCATGGGCAAAAGCACATATGGAACAGCATATAAAGCAACATTAGAAGATGGAAATGAAGTTGCGGTGAAAAGATTGAGGGAAAAGACAACAAAAGGGCAGAAAGAATTTGAAGCCGAAGTTGCAGGACTCGGAAAAATTAGACATCCGAATCTACTTGCTCTTAGAGCTTACTATTTAGGCCCCAAAGGAGAGAAGCTCCTTGTCTTTGATTACATGCCCAGAGGAAGTCTCTCTTCCTTCCTTCATGCTCGCGGACCGGAAACCACAGTTGATTGGCCAACGAGGATGAAAATAGCGATCGGAATCACGCAAGGCTTGAACTACCTCCACACAGAGGAGAATCTAATTCATGGAAACCTCACGTCCAGCAACATTCTGCTGGACGATCAGACCAATGCTCGTATTGCAGATTTTGGGCTTCCTAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCCACTGCAGGATCACAGGGCTACAATGCACCAGAGCTAACAAAAACGAAAAAAACCACAACAAAGACAGATGTTTACAGCCTTGGAGTCATAATCTTGGAACTTTTGACAGGAAAGTCTCCTGGAGAAGCCATGGATGGAATGGATTTACCTCAGTGGGTGGCCTCAATTGTAAAGGAAGAGTGGACAAATGAAGTGTTTGATTTGGAGCTTATGAAAGATACCCAAAATATTGGTGATGAACTGTTGAACACTTTAAAACTAGCCCTGCATTGTGTTGATCCATCACCAGCTGCTCGGCCAGATGTTCAGCAAATTCTCCAGCAACTGGAGGAAATTAATGCTTCTACTTCCGGTGACGATGGTTTCAAAAACCAACCAGCAAATGAATAG 2574 44.25 MGKSHNPLSEFQVHPLQFMQILAPKTADWCSKSPNMNRKFKNQQWKSCSSYLIALFFAHLLAVSLRPVTGQMWDGVAVTQGDFQALQAIKHELIDLKGALHSWNGSNGACSGQWAGIKCVKGQVIAIQLPWKALAGRISKRIGQLRELRKLSLHDNMISGAVPRSLGFLPNLRGVYLFNNRLSGSIPPTIGNLPLLQTLDLSNNLLTGEIPSGLANSTKLLRVNLSYNSLSGSIPSSFTQSFSLIILALQHNNISGTVPDSWGGLGNRTCPLGVLTLDHNAIYGAIPASLSKLEWLQEISIGDNKISGAIPSEIGRLKRLRLLDLSNNAISGGFPSSFSNLSSLESLNVENNRLESQIPGDIDRLQNLSVVKLGKNRFSGEIPASFGNISGIDQLDFSENNLTGQIPTSLTRLLNLTSFNVSYNNLSGPVPVLLSNKFNASSFVGNLQLCGFSTSTPCLPASSPHNITTPSTEVLQPHRHRRLSLKDIILIAAGALLVLLLLLCSILLCCLLSKRAAARKNDKTAAKETAARGIEKAAPGSTDVGAGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFEAEVAGLGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETTVDWPTRMKIAIGITQGLNYLHTEENLIHGNLTSSNILLDDQTNARIADFGLPKLMTSAAATNVIATAGSQGYNAPELTKTKKTTTKTDVYSLGVIILELLTGKSPGEAMDGMDLPQWVASIVKEEWTNEVFDLELMKDTQNIGDELLNTLKLALHCVDPSPAARPDVQQILQQLEEINASTSGDDGFKNQPANE 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36754408 36757171 - CePI673135_10g022420.1 Cec10g2242 215157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2242 857 Pfam Leucine rich repeat 319 378 IPR001611 GO:0005515(InterPro)
Cec10g2242 857 Pfam Protein tyrosine and serine/threonine kinase 573 837 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec10g2242 857 Gene3D Transferase(Phosphotransferase) domain 1 647 853 - -
Cec10g2242 857 CDD STKc_IRAK 575 840 - -
Cec10g2242 857 FunFam Leucine-rich repeat receptor-like protein kinase 555 645 - -
Cec10g2242 857 Pfam Leucine Rich Repeat 394 413 IPR001611 GO:0005515(InterPro)
Cec10g2242 857 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515(InterPro)
Cec10g2242 857 Pfam Leucine Rich Repeat 220 239 IPR001611 GO:0005515(InterPro)
Cec10g2242 857 Pfam Leucine Rich Repeat 415 436 IPR001611 GO:0005515(InterPro)
Cec10g2242 857 SUPERFAMILY Protein kinase-like (PK-like) 573 841 IPR011009 -
Cec10g2242 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 283 845 IPR052451 -
Cec10g2242 857 Gene3D Ribonuclease Inhibitor 80 239 IPR032675 -
Cec10g2242 857 Gene3D Ribonuclease Inhibitor 240 355 IPR032675 -
Cec10g2242 857 Pfam Leucine rich repeat N-terminal domain 81 119 IPR013210 -
Cec10g2242 857 FunFam Leucine-rich repeat receptor protein kinase EMS1 188 271 - -
Cec10g2242 857 Pfam Leucine Rich repeats (2 copies) 170 207 IPR025875 -
Cec10g2242 857 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 272 338 - -
Cec10g2242 857 PRINTS Leucine-rich repeat signature 196 209 - -
Cec10g2242 857 PRINTS Leucine-rich repeat signature 317 330 - -
Cec10g2242 857 FunFam Leucine-rich repeat receptor-like kinase 82 187 - -
Cec10g2242 857 FunFam Pollen receptor-like kinase 1 646 851 - -
Cec10g2242 857 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 339 458 - -
Cec10g2242 857 ProSiteProfiles Protein kinase domain profile. 569 840 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec10g2242 857 Gene3D Ribonuclease Inhibitor 356 462 IPR032675 -
Cec10g2242 857 SUPERFAMILY L domain-like 106 450 - -
Cec10g2242 857 SMART LRR_typ_2 413 436 IPR003591 -
Cec10g2242 857 SMART LRR_typ_2 145 168 IPR003591 -
Cec10g2242 857 SMART LRR_typ_2 341 365 IPR003591 -
Cec10g2242 857 SMART LRR_typ_2 317 340 IPR003591 -
Cec10g2242 857 SMART LRR_typ_2 169 192 IPR003591 -
Cec10g2242 857 SMART LRR_typ_2 193 217 IPR003591 -
Cec10g2242 857 Gene3D Phosphorylase Kinase; domain 1 575 646 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g2242 Cec-Chr10:36754408 Cec11g0278 Cec-Chr11:3025179 1.70E-73 dispersed
Cec03g0798 Cec-Chr3:9198884 Cec10g2242 Cec-Chr10:36754408 5.30E-56 transposed
Cec03g1471 Cec-Chr3:32773090 Cec10g2242 Cec-Chr10:36754408 1.70E-56 transposed
Cec04g1618 Cec-Chr4:35517386 Cec10g2242 Cec-Chr10:36754408 1.20E-44 transposed
Cec07g0532 Cec-Chr7:6314283 Cec10g2242 Cec-Chr10:36754408 3.90E-167 transposed
Cec09g0907 Cec-Chr9:8588162 Cec10g2242 Cec-Chr10:36754408 1.10E-67 transposed
Cec10g2242 Cec-Chr10:36754408 Cec05g0956 Cec-Chr5:8355589 3.10E-46 wgd
Cec10g2242 Cec-Chr10:36754408 Cec07g0503 Cec-Chr7:5751282 5.60E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72363 PF07714 PK_Tyr_Ser-Thr 4.00E-42 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2242 - - - 0.0