Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec10g2249 ATGGAAGTTCCGAAATTCAAGTCTCTTCAACCTCCTCCATTTCCCATGTCTCCTTCTTCTTACCTTTCAGCTTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTAAATTCCCCTCTCCTTTTCTCATTTGGTGTTTTCCCTTCTCCTACTACTGGTGCCTTAAATTTGAGAAATGATTATGAGGAGGGTGAGCAGCAAGAAATGAAGGCAGATGTGAAAAATTACTCTGCTTCTTCGTTTAACCCACGAACAGGATCCTCTGCTTCGTCTTATTTTCAGTCCTCTTCTTCCAACGTGACACCACTGAATCCGAACGGTTTGTCGTGTGATGAAAGTGGAGCGAAATCAGAATTTGTTACTACAGAAATGGCGGCAGCTGAATCAAAGCCAATTTCTCAGCTACCAATTTACAACAGAGAACAGAAAAAATCAGAGAACGATGGATATAACTGGAGAAAATATGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCACGAAGCTATTACAAGTGCACTTTCCCAAGTTGCCCAACAAAGAAGAAAGTTGAAAGATCTTTAGACGGCCAAATTACTGAGATTGTTTATAAGGGAAGCCATAATCACGCCAAGCCCCAGCCCACAAGACGTTCCGGTAACTCCGCGGTTTACGATCCATCTTCGGCGGATTCCGCCCTGCTGCAGGAGGATTCCTCCGTCTCGGTGGGGGATGAGGAATTCGAACCCAATTCGCCGTTTAGCAACTCGGTGGACGACAATGAAAATGAACCGGAAGCTAAGAGATGGAAAGGGGAAAATGAGAACGAGGGATATTGTGGGGGTGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTGGTTCAAACAACCAGCGAAATTGACATACTGCCGGATGGTTATAGATGGAGGAAATACGGACAAAAGGTTGTCAAAGGAAATCCAAATCCGAGGAGCTACTACAAATGCACATCTTTAGGCTGCCCGGTGAGGAAACACATCGAGAGAGCGGCTAACGACATGAGGGCCGTGATCACTACCTACGAAGGCAAACACAACCATGAAGTTCCAGCAGCCCGTGGCAGCGGTGGCAGTGGCTATAATGCCATCAACCGACCTACACCGACCAACATTCCAATGCCGGTGAGGCCGTCTGCCATCGGTAGTCACTCTTTCCCGGCAAATTTTCCGGCCACGTTCCAGCCGGCAAATTTAGCCATGTCAGAAATAGGAGCAGAAGCATCATCTTTCCCATTTCAAACATCACAAGGAGTGCCTCCAAGTTTCCAAGTTTCAGGATTTGGATCCGCAGCCAAGGAAGAAGCCAGAGATGACATATACTTCATCAACTCATTTCTATCTTAG 1356 46.31 MEVPKFKSLQPPPFPMSPSSYLSAFSSGLSPTELLNSPLLFSFGVFPSPTTGALNLRNDYEEGEQQEMKADVKNYSASSFNPRTGSSASSYFQSSSSNVTPLNPNGLSCDESGAKSEFVTTEMAAAESKPISQLPIYNREQKKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHAKPQPTRRSGNSAVYDPSSADSALLQEDSSVSVGDEEFEPNSPFSNSVDDNENEPEAKRWKGENENEGYCGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGSGGSGYNAINRPTPTNIPMPVRPSAIGSHSFPANFPATFQPANLAMSEIGAEASSFPFQTSQGVPPSFQVSGFGSAAKEEARDDIYFINSFLS 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36799289 36801920 + CePI673135_10g022490.1 Cec10g2249 215164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec10g2249 451 Gene3D WRKY domain 132 205 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g2249 451 MobiDBLite consensus disorder prediction 252 266 - -
Cec10g2249 451 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 86 359 IPR044810 GO:0003700(InterPro)
Cec10g2249 451 FunFam WRKY transcription factor 135 205 - -
Cec10g2249 451 SMART WRKY_cls 145 203 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g2249 451 SMART WRKY_cls 294 353 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g2249 451 MobiDBLite consensus disorder prediction 139 164 - -
Cec10g2249 451 MobiDBLite consensus disorder prediction 204 251 - -
Cec10g2249 451 ProSiteProfiles WRKY domain profile. 140 204 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g2249 451 Gene3D WRKY domain 281 347 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g2249 451 Pfam WRKY DNA -binding domain 146 201 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g2249 451 Pfam WRKY DNA -binding domain 296 352 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g2249 451 MobiDBLite consensus disorder prediction 195 275 - -
Cec10g2249 451 SUPERFAMILY WRKY DNA-binding domain 142 204 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g2249 451 SUPERFAMILY WRKY DNA-binding domain 286 354 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g2249 451 ProSiteProfiles WRKY domain profile. 289 354 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec10g2249 451 FunFam WRKY transcription factor 33 281 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0015 Cec-Chr3:179653 Cec10g2249 Cec-Chr10:36799289 5.80E-89 dispersed
Cec10g2249 Cec-Chr10:36799289 Cec11g0476 Cec-Chr11:5119750 3.10E-66 dispersed
Cec10g2249 Cec-Chr10:36799289 Cec05g2623 Cec-Chr5:37015293 5.90E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30469 PF03106 WRKY 8.90E-25 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec10g2249 K13424 - csv:101205651 805.438