Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0003 ATGGATGAAAATGGTGGGATAAAGTTGAGTGGAATCCGGCAGATTGTGAGGCTGAAAGAAACTCTCCAACATTGGCAAGGCGTCACAGTTTGCCCCAAATCCAAAGCAGCAGCAGCCCATGAAAATGGAAGCCAAAATCAAAATCATAATCATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACAAATGTGTTGTGTTGTGATTCGGATGAGGAGAGCTGCCAGAGCCCTGAGCATCCACCCGATGTCCCCAAAGGGTATTTGGCTGTTTATGTTGGGCCGGAGCTTCGGAGGTTTATCATTCCCACCAGCTATCTTAGTCATTCCGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTTTGGATTCGATCATACCGGCGGGCTCACTTTCCCATGCGAGATCGAAACATTCAAATACCTTCTCAAGTGCATGGAGAGCCAGCAGAAGGATCATCCTGATGACCACACCCCAGCTGAGAGTTCATTGACTATGGAAGGATAA 510 47.84 MDENGGIKLSGIRQIVRLKETLQHWQGVTVCPKSKAAAAHENGSQNQNHNHGILSPAINKRLTNVLCCDSDEESCQSPEHPPDVPKGYLAVYVGPELRRFIIPTSYLSHSVFKVLLEKAEEEFGFDHTGGLTFPCEIETFKYLLKCMESQQKDHPDDHTPAESSLTMEG 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 57289 58458 - CePI673135_11g000030.1 Cec11g0003 215215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0003 169 Pfam Auxin responsive protein 57 146 IPR003676 GO:0009733(InterPro)
Cec11g0003 169 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 20 147 IPR003676 GO:0009733(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0198 Cec-Chr4:7606940 Cec11g0003 Cec-Chr11:57289 1.90E-09 dispersed
Cec05g2865 Cec-Chr5:38844301 Cec11g0003 Cec-Chr11:57289 9.10E-19 dispersed
Cec08g1490 Cec-Chr8:26622544 Cec11g0003 Cec-Chr11:57289 3.50E-16 dispersed
Cec10g1901 Cec-Chr10:33843129 Cec11g0003 Cec-Chr11:57289 1.80E-13 dispersed
Cec11g0003 Cec-Chr11:57289 Cec04g1161 Cec-Chr4:31195623 1.10E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0003 K14488 - csv:101207913 327.405