Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0021 ATGGTGTTCCAAGATTTCGACCAAATCTCTGAACGCCGACGAGCCGAGAGGGCACGTAAGTTTCGAAAACGAGTCACCATTGCTGTGGTCTCGGCCTCTGTGATCCTCCTCGTCGTTGCTGCCGCTGTGTTCGTCCAGGTCTCCTCCTCCTCCAAGTCCACCACCAAAAATGGCGATAGCAAGAGTAGTGGCAACTCTAAACAACCCGTGCCACCCGACACGAAACAAGTGTCGCGCATCGAGAAAATGATTACCATGATATGCAACTCGACAGACTACAAAGGCAAATGCGAGAGCACTCTAAAGGATGGCGTCCACACGGATCCTGATTCCTCGGACCCGAAAGACCTCATCAAGCTGGCAATCTCGGCTGCGGCGGATGAGGTCAAATCTGCAGTGAAAAAGGCGTCGGGGTTCAACTTCGCGACGCCGGAGGAAAAGGGGGCGTTCGAGGACTGCAAGGTGCTGTTGGAAGACGCTGTGGAGGAATTGGAGATGTCTATGAGCGAAGTGAGCAAGAAGAATATGGGAAAGCTGACGGCGAAAACGACGCCGGATCTGAATAACTGGCTAAGTGCGGTGATGTCGTATCATGAAACTTGTGTTGATGGGTTCCCAGAGGGGAAGATGAAGACCGAAATGGAGAAGGCAGTGAAGGCTGGAAAGGAACTCACCAGTAATTCCTTGGCGATGATATCGCAGGTGGCTTCCTTTTTCTCCACGTTCGAGATGCCTGAGGGAGCTGCAACACGACGTCGTCTCATGGCCAACGGTGGGGTGCCAACTTGGATGAATAGCAATGAGCGAAGGATGTTGAAGGGCGCTTCTGCTGGGGTTAAGCCCAAGCCTAACGTTGTGGTCGCCAAAGATGGGTCTGGAGATTTCAAAACTATTAATGAAGCCTTGGCCAAGATGCCTGCCAAATATGATGGACGGTATGTGATCTATGTGAAGGAAGGAATCTACGAAGAGACGGTGGTGATTACGAAAAAGATGGCGAATGTTACAATGTACGGAGATGGTTCTCAAAAGAGCATGATAAGTGGGAGCAAGAACTTTGTGGATGGAGTCAGAACCTTCCAAACCGCAACATTTGTGGCACTTGGAGAGGGCTTCTTGGGGCAAGGCATGGGATTCAGAAACACAGCGGGTCCTGAAAAGCACCAAGCCGTAGCAGCGAGAGTCCAAGCAGACCGAGCCATATTTGTGAACTGCCGGTTCGAGGGGTACCAGGACACGTTATACGCCCAAGCCCATCGCCAGTTCTACAGAAGCTGTCTGATAACAGGCACCATCGACTTCATCTTCGGTGACGCCGCTGCCATTTTCCAAAACTGCAACATGATGCTCAGAAAGCCCTTAGACAACCAACAGAACATAGTCACAGCACAGGGCAGGACTGACAAGCATGAAACCACAGGCATAGTCCTCCAAAACTGCAAAATTTTGCCCGACAAGACGTTGGAGCCTGTGAAGTCCCAATTCAAAAGCTACTTGGGGAGGCCTTGGAAAGAGTTCTCTAGAACCATTGTAATGGAGTCCACCATTGAAGATATCATTCATCCCGATGGCTGGATGCCTTGGGAAGGAGATTTTGCACTCAAAACCTTGTACTATGCTGAATTTAACAACCAAGGCCCTGGGGCTAAGACCGATGCCAGGGTCAAATGGCCTGGCTACAAGGTGATTGATAAGGACGAGGCTGCAAAGTTTACCATAGGAACTTTTCTAGAGCTGGATTGGATCGAGAGCTCCTCCGCTCCTGTTCATGTCGGCCTATTTTGA 1785 50.59 MVFQDFDQISERRRAERARKFRKRVTIAVVSASVILLVVAAAVFVQVSSSSKSTTKNGDSKSSGNSKQPVPPDTKQVSRIEKMITMICNSTDYKGKCESTLKDGVHTDPDSSDPKDLIKLAISAAADEVKSAVKKASGFNFATPEEKGAFEDCKVLLEDAVEELEMSMSEVSKKNMGKLTAKTTPDLNNWLSAVMSYHETCVDGFPEGKMKTEMEKAVKAGKELTSNSLAMISQVASFFSTFEMPEGAATRRRLMANGGVPTWMNSNERRMLKGASAGVKPKPNVVVAKDGSGDFKTINEALAKMPAKYDGRYVIYVKEGIYEETVVITKKMANVTMYGDGSQKSMISGSKNFVDGVRTFQTATFVALGEGFLGQGMGFRNTAGPEKHQAVAARVQADRAIFVNCRFEGYQDTLYAQAHRQFYRSCLITGTIDFIFGDAAAIFQNCNMMLRKPLDNQQNIVTAQGRTDKHETTGIVLQNCKILPDKTLEPVKSQFKSYLGRPWKEFSRTIVMESTIEDIIHPDGWMPWEGDFALKTLYYAEFNNQGPGAKTDARVKWPGYKVIDKDEAAKFTIGTFLELDWIESSSAPVHVGLF 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 306833 308883 + CePI673135_11g000210.1 Cec11g0021 215233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0021 594 Pfam Pectinesterase 284 578 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cec11g0021 594 FunFam Pectinesterase 80 236 - -
Cec11g0021 594 CDD PMEI-like_3 87 237 - -
Cec11g0021 594 SMART PMEI_2 79 231 IPR006501 GO:0004857(InterPro)
Cec11g0021 594 MobiDBLite consensus disorder prediction 51 73 - -
Cec11g0021 594 SUPERFAMILY Pectin lyase-like 280 578 IPR011050 -
Cec11g0021 594 Coils Coil 154 174 - -
Cec11g0021 594 NCBIfam pectinesterase inhibitor domain 81 235 IPR006501 GO:0004857(InterPro)
Cec11g0021 594 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Cec11g0021 594 PANTHER PECTINESTERASE 26 584 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cec11g0021 594 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 236 IPR035513 -
Cec11g0021 594 MobiDBLite consensus disorder prediction 51 76 - -
Cec11g0021 594 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 235 IPR035513 -
Cec11g0021 594 Pfam Plant invertase/pectin methylesterase inhibitor 83 231 IPR006501 GO:0004857(InterPro)
Cec11g0021 594 Gene3D - 278 593 IPR012334 -
Cec11g0021 594 FunFam Pectinesterase 278 593 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0725 Cec-Chr1:8024767 Cec11g0021 Cec-Chr11:306833 1.70E-141 dispersed
Cec01g0726 Cec-Chr1:8031467 Cec11g0021 Cec-Chr11:306833 2.10E-136 dispersed
Cec05g0742 Cec-Chr5:6111351 Cec11g0021 Cec-Chr11:306833 3.00E-135 dispersed
Cec10g0006 Cec-Chr10:119820 Cec11g0021 Cec-Chr11:306833 5.50E-101 dispersed
Cec11g0021 Cec-Chr11:306833 Cec11g1504 Cec-Chr11:29244139 3.50E-81 dispersed
Cec11g0021 Cec-Chr11:306833 Cec06g0498 Cec-Chr6:5588404 8.40E-136 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0021 - - - 0.0