Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0032 ATGTCCTTTTCAGCTGCCTCAAATCTTCCCTCAGGAGGACCCCATTCAGGGCCCTCTTCCGATGCATTGTATAGGGAATTATGGCATGCTTGTGCAGGACCACTTGTCACCCTTCCACGCCAAGATGAACGAGTATACTACTTTCCTCAGGGTCACATGGAACAGCTGGAAGCCTCAATGCATCAAGGTTTGGAGCAACAAATGCCTTCATTCAACCTTCCATCAAAAATACTTTGTAAAGTTGTCAATGTTGTTCTTCGGGCAGAACCCGACACCGATGAAGTTTATGCTCAGATAACTCTATTACCAGAAAGCAATCAAAGTGAAGTAACGAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTTCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTTTCTGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTCGCGACTGATTTACATGGGAGTCAATGGCATTTTAGGCACATTTTTCGAGGTCAACCAAGGCGTCATTTGCTAACAACTGGGTGGAGCGTCTTTGTTAGTTCCAAAAAACTGGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAACTAAACAATATTCCATCTTCTGTTATATCAAGTCACAGTATGCATCTTGGAGTTTTAGCCACTGCTTCTCATGCTATTGCAACTGGAACACTCTTTTCTGTCTTTTACAAGCCAAGGACAAGCAGGTCTACGTTTCTTGTAAGTCTGAACAAGTACCTTGAAGCTCAAAACCACAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTACCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCGTCACCTGGATGGGCGAATTCTGAGTGGCGATCGTTAAAGGTGCAATGGGATGAACCTTCATCTATCTTGCGTCCAGATAAGGTGTCTGCTTGGGAATTGGAGCCACTTGTTGCTTCTAACCCTCTAAGCACTCAGCCTACACAGAGGAACAAGCGTCCACGGCCTACTGTTTTGCCTTCATCTTCGCCAGATGCAACTGTACTTGGTGGGTGGAAACCTACGGTTGAATCTTCTGCTTTCTCATATACTGAGCCACAGCGCGGAAGGGACCTATATTCATCACCGAAGTTCAGTACTGCTGCTTCAAATTCACTTGGTTTTAATGCGAATGGTTCTCTTGGTGCTGTGTCCAGCAACACCTACTGGTCTAATACCAATAGGGTGGAAAATATTATGGACACTTCATCTCATGGAGCAAACAGGGAACCCATTGTAAAGAAACAGAACACTAGAAATGGATGCAGGCTCTTTGGGATCCAGCTTCTTGGAAATTCTAATGTAGACGAAGCTTCTCCTATTTCAACGCCTAAAATGGTCGGTGAGGATAGGCTGGTTCCACCTGTAGACTCAGAATTTGACCAGCATTCTGAACCATCAAACATTCCCCGATCAGATATTCCTTCAGTAAGCTGTGATGCTGATAAATCGTGCCTGATCTCCCCATTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCACATGCAAGGAATTGCTGTTGGGAGGGCTGTTGATTTAACCCGGTTCAATCAATATGATGATCTACTCAGGAAATTGGAGGAGATGTTTGACATAGAGGGTGAGCTTTGTGGCTCTTTAAAGAAATGGCAGGTTGTTTACACTGATGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAATGAGTTCTGCAGCATGGTAAGGAAGATATTCATTTACACAACAGAAGAAGTGAAGAGACTCTCGCCCAAGATAAAACTCCCACTGGGTGGAGATGGAAAGCTTTGCAAACCAGATTCCGATACAATTGCCAACCACATGGAGGATCAATCGTCCATCGTGGGATCAGATTGCTGA 2037 44.97 MSFSAASNLPSGGPHSGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVVLRAEPDTDEVYAQITLLPESNQSEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGSQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNIPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLKVQWDEPSSILRPDKVSAWELEPLVASNPLSTQPTQRNKRPRPTVLPSSSPDATVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTAASNSLGFNANGSLGAVSSNTYWSNTNRVENIMDTSSHGANREPIVKKQNTRNGCRLFGIQLLGNSNVDEASPISTPKMVGEDRLVPPVDSEFDQHSEPSNIPRSDIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSLKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGDGKLCKPDSDTIANHMEDQSSIVGSDC 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 438194 447164 - CePI673135_11g000320.1 Cec11g0032 215244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0032 678 CDD B3_DNA 126 228 IPR003340 GO:0003677(InterPro)
Cec11g0032 678 Gene3D - 125 230 IPR015300 -
Cec11g0032 678 MobiDBLite consensus disorder prediction 362 386 - -
Cec11g0032 678 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Cec11g0032 678 FunFam Auxin response factor 548 642 - -
Cec11g0032 678 FunFam Auxin response factor 126 230 - -
Cec11g0032 678 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677(InterPro)
Cec11g0032 678 Gene3D - 548 642 - -
Cec11g0032 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 643 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec11g0032 678 Gene3D - 291 364 - -
Cec11g0032 678 FunFam Auxin response factor 291 363 - -
Cec11g0032 678 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
Cec11g0032 678 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
Cec11g0032 678 Pfam Auxin response factor 254 336 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec11g0032 678 SUPERFAMILY CAD & PB1 domains 555 630 - -
Cec11g0032 678 Pfam AUX/IAA family 552 644 IPR033389 -
Cec11g0032 678 ProSiteProfiles PB1 domain profile. 553 646 IPR053793 -
Cec11g0032 678 MobiDBLite consensus disorder prediction 362 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g2027 Cec-Chr6:33396158 Cec11g0032 Cec-Chr11:438194 1.80E-176 dispersed
Cec07g1249 Cec-Chr7:28004971 Cec11g0032 Cec-Chr11:438194 7.00E-174 dispersed
Cec11g0032 Cec-Chr11:438194 Cec11g1185 Cec-Chr11:24283545 3.10E-17 dispersed
Cec11g0032 Cec-Chr11:438194 Cec09g0941 Cec-Chr9:8919860 9.50E-176 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30474 PF02309 AUX_IAA 1.80E-11 CL0072 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0032 K14486 - csv:101204612 1313.52