Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0049 ATGGAGGGAGGACAAGACGATGCTGGAAATGGGTTCACGGCGGCCGCTGGATCAAATCATCCGAGACCCGAGGCGGCAGCTCCACCACCGGAAGGTGGTGGTCCGGTGGGTTCTTCAGCGGCGGCAGGAAAGAAGAAGAGGGGGAGACCGAGGAAGTATGGGCCGGGCGGGAAGTTGAATGTGGCGGCACTGTCGCCGAAGCCGATATCGGCGTCGGCACCGGCACCGGCGGCAGTTATTGATTTCTCGGCGGAGAAACGTGGAAAAGTGCGGCCGGCGACGTCCTTGACCAAAACCAAATATGAAGTGGAGAATTTAGGTGAATGGGTACCTTGTTCTGTTGGTGCTAATTTCACACCCCATATCATCACAGTAAGCACTGGCGAGGACGTTACGATGAAGGTTCTCTCATTTTCTCAACAAGGGCCTCGAGCAATCTGCATTCTCTCCGCTAACGGCGTGATTTCGAGCGTCACGCTCCGTCAACCCGACTCCTCTGGAGGAACATTAACATATGAGGGTCGTTTTGAGATATTGTCATTGTCGGGATCGTTCATGCCGAGCGACAACGCAGGAACAAAGAGCAGAATTGGTGGAATGAGTGTCTCCTTAGCAAGTCCAGATGGACGAGTTGTTGGTGGTGGAGTTGCCGGTTTGTTAGTAGCTGCAAGTCCAGTTCAAGTGGTTGTAGGAAGCTTTTTATCTGGAAACCAACATGAGCAAAAGTCGAAAAAATCAAAACCCGACGTCGTATTACCAGTCTCTGCTTTTCCAATCTCTAGTGTGGAACCAAAATCATATAAGACGACGACGACGACAACGATGACGACATCTTCGTTTCGTGCTGAAACATGGTCACCTTTAGTTCCAGATTTAAAAAGCCAGCCAACTGATATCAATGTATCATTAACAAGTGGTTAA 921 50.49 MEGGQDDAGNGFTAAAGSNHPRPEAAAPPPEGGGPVGSSAAAGKKKRGRPRKYGPGGKLNVAALSPKPISASAPAPAAVIDFSAEKRGKVRPATSLTKTKYEVENLGEWVPCSVGANFTPHIITVSTGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNAGTKSRIGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKSKKSKPDVVLPVSAFPISSVEPKSYKTTTTTTMTTSSFRAETWSPLVPDLKSQPTDINVSLTSG 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 632015 634633 - CePI673135_11g000490.1 Cec11g0049 215261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0049 306 CDD DUF296 119 210 IPR005175 -
Cec11g0049 306 FunFam AT-hook motif nuclear-localized protein 1-like 120 250 - -
Cec11g0049 306 Pfam Plants and Prokaryotes Conserved (PCC) domain 120 233 IPR005175 -
Cec11g0049 306 ProSiteProfiles PPC domain profile profile. 115 260 IPR005175 -
Cec11g0049 306 MobiDBLite consensus disorder prediction 1 59 - -
Cec11g0049 306 Gene3D - 120 251 - -
Cec11g0049 306 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 16 267 IPR039605 GO:0003680(InterPro)
Cec11g0049 306 SUPERFAMILY AF0104/ALDC/Ptd012-like 117 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0259 Cec-Chr5:2132081 Cec11g0049 Cec-Chr11:632015 2.80E-75 dispersed
Cec05g0895 Cec-Chr5:7744480 Cec11g0049 Cec-Chr11:632015 2.30E-64 dispersed
Cec11g0049 Cec-Chr11:632015 Cec11g1942 Cec-Chr11:33528232 3.80E-47 dispersed
Cec11g0049 Cec-Chr11:632015 Cec01g0352 Cec-Chr1:3658922 2.00E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0049 - - - 0.0