Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0084 ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGGCAGATGAGAGGTCAGCAGCAGCAGCCGCCGCCGCCACCACCTCCCTCTAATTCTTCCACTGCTCCAAATCCTCAACAACCCCAAAAGAAAAAGAGAAACCAACCAGGAACTCCAAATCCAGATGCGGAAGTGATAGCGTTGAGTCCGAAGACGTTAATGGCAACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAAAATCTACAACTGCATAGAAGAGGACACAATCTGCCATGGAAATTAAAGCAAAAAAGCACAAAAGAGCCAAAAAGAAAAGTGTATTTATGCCCAGAACCCACATGCGTACACCACGACCCATCAAGAGCACTTGGAGATTTAACAGGCATCAAGAAACACTACTCGAGAAAGCACGGCGAGAAGAAATGGAAGTGCGATAAATGCTCTAAACGTTACGCCGTTCAATCCGACTGGAAAGCCCATTCCAAAACCTGTGGCACCAGAGAATATCGCTGCGATTGTGGTACTCTCTTCTCCAGACGGGACAGTTTTATTACCCATAGAGCTTTTTGTGATGCATTGGCTCAAGAAAGTGCAAGACATCCTCCAAATTTAGGGTCTGCTATTGGAAGCCATTTATATGGAGGTAATAGCAATGTGGGTTTGACATTATCACAAGTCCCTCAAATTTCTTCTCTTCAAGACCATCCCAATATCCCCCAATCCCCTCACGACGTCCTCCGTCTCGGTGGCGGCCGAACCGGGCAATTCACTCATCTCCTCCCTCCTTCTATTGGCTCTTCCTTCCGACCCCCACCACAACAAGCAATGCCGTCGTCGAATAATGCCGCCGCGTTCTTCCTTTCGGACCAAACTAACCAAAGTAGCTTCCATGAAGATCATCATCAAAGCCAATCGCAACAAGGGTTGTTTGGAAACAAAGCCTTTCATGGGCTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAGTAACAACAACAACAATTCTGCCTCAAATCTCTTCAATTTAGGCTTCATTTCAAATCCAACTGGTGATAATACTTCCAATATGAACAGTAACAACGACACCAACACTAACAATAGCAACAGCAGCAGCAACAACAACAACAATCTTCCATCCTCTTTGCTAAATCAATTCAATGGAACAAACAATGGCAACAATGACGGTCCTGCATCTAATATTTTCGCCGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTTCCATCTCTCTACAGCACGGCCGCCCCGGGAGGATGTAGTAGCGGTACAAGCGGAGGAGCAATCCCACATATGTCAGCGACAGCACTTCTCCAAAAGGCAGCACAATTAGGCTCAACAACGTCGAGTAGCAACACTACAGCAACGTTGCTAAGGACATTTGGGAGCTCCTCAAGCTCAGCCGGGAAGGCGACGGATAGAACACTATTCCCACCAAGCTACGGTGGAGTAGTGTTTGGCGAGAACGAGAGCAATCTCCAGGATTTGATGAACTCGTTCACGACGGGGAGCTCGGGGAGCGGGATGTTCGGCAGCGGGATGAGCTCGTTCGGTGGATTTGAAGGGAGTAATCGAAACAATATGGAAAGTATGGAGGATCCAACGAAGTTACAACAGAATTTAAGCACAGTGAGTGTGGGAGGTGGGGCAGATAGGTTAACAAGAGACTTCTTAGGGGTTGGACAGGTTTTGAGAAGTATGAGCGGTGGTGGCGGTTATTCACAAAGAGAACATAAACAGCCACCGCAAGGGATAGTTTTGGAGGTGAAGAAGAGAAGAACGAAAACAAGTACAGACAGAAACAGATTTTTCAAATGCAACAAATATCAATGCCTGCCAACTTCAATCAGTGATCCAAAAATATCAGTGGATGGTGGAAGAATTCAAAGCTTTATACATTCTTTACATTAA 1962 45.62 MAASSSSVPLFGVREEGQMRGQQQQPPPPPPPSNSSTAPNPQQPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGSAIGSHLYGGNSNVGLTLSQVPQISSLQDHPNIPQSPHDVLRLGGGRTGQFTHLLPPSIGSSFRPPPQQAMPSSNNAAAFFLSDQTNQSSFHEDHHQSQSQQGLFGNKAFHGLMQFPSDIQTHASNNNNNSASNLFNLGFISNPTGDNTSNMNSNNDTNTNNSNSSSNNNNNLPSSLLNQFNGTNNGNNDGPASNIFAVNIMGDQINSAAVPSLYSTAAPGGCSSGTSGGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSSSAGKATDRTLFPPSYGGVVFGENESNLQDLMNSFTTGSSGSGMFGSGMSSFGGFEGSNRNNMESMEDPTKLQQNLSTVSVGGGADRLTRDFLGVGQVLRSMSGGGGYSQREHKQPPQGIVLEVKKRRTKTSTDRNRFFKCNKYQCLPTSISDPKISVDGGRIQSFIHSLH 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1068620 1072836 - CePI673135_11g000840.1 Cec11g0084 215296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0084 653 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Cec11g0084 653 Gene3D Classic Zinc Finger 129 208 - -
Cec11g0084 653 MobiDBLite consensus disorder prediction 360 403 - -
Cec11g0084 653 FunFam protein indeterminate-domain 12-like 54 122 - -
Cec11g0084 653 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 177 212 - -
Cec11g0084 653 MobiDBLite consensus disorder prediction 23 38 - -
Cec11g0084 653 Pfam Zinc-finger of C2H2 type 75 97 IPR013087 -
Cec11g0084 653 SMART c2h2final6 116 146 IPR013087 -
Cec11g0084 653 SMART c2h2final6 75 97 IPR013087 -
Cec11g0084 653 SMART c2h2final6 151 171 IPR013087 -
Cec11g0084 653 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Cec11g0084 653 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 592 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cec11g0084 653 MobiDBLite consensus disorder prediction 1 60 - -
Cec11g0084 653 Gene3D Classic Zinc Finger 54 123 - -
Cec11g0084 653 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Cec11g0084 653 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Cec11g0084 653 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 112 146 - -
Cec11g0084 653 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 150 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g0710 Cec-Chr9:6352375 Cec11g0084 Cec-Chr11:1068620 2.20E-84 dispersed
Cec10g2045 Cec-Chr10:35188726 Cec11g0084 Cec-Chr11:1068620 3.30E-85 dispersed
Cec01g1580 Cec-Chr1:30412475 Cec11g0084 Cec-Chr11:1068620 9.10E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30479 PF12171 zf-C2H2_jaz 4.10E-05 CL0361 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0084 K25870 - csv:101219959 976.852