Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0097 ATGTGCCATTCCACCGACTCCACGGCCTTACAGGACTTCCGCCGCAGTTTTAGTTCTCAAATCGATGGATTGCACACCAACTGTTCGACGAATTGCTGCACTTGTACTGGCGTCACTTGTGATTCTTCTGGGAGGGTTGTGAAGATTGAACTTGGTGGGAGAAAGCTAGTTGGTCGACTACCAATCTCAATTGCAAGATTGGAACGCCTCAGAGTTCTTAATTTGTCCTCTAATTCCCTCACTGGGTCTATTCCTTTGGCTCTGTTTCAGCTCCCATACTTGGAAGTTCTTGATCTTAGCTTCAATCGGTTCTTGGGAAGCATCTCAACAGGTAACATCGATTTGCCTTCCCTTCGGATTCTTAATGTTTCTTATAACTCCTTCAACGGTGTTCTTCCATTTGGGGTTTGTGTCAACTCCTCTAGAATTGAGATTCTGAATCTGGGTTTCAATGATTTCGTTGGTATGTTTCCTTTTCAACTTGCTGAATGTGTTTCCTTGAAGAGACTGCATCTGGAATCGAATTTTATCAGTGGTGGGATACCTGATGAGGTTTTTGGATTGAGGAAATTGACCCATTTGTGTGTTCAGAACAACAAGCTTTCTGGTTCTTTGAGTAGTGTTGTTGGGAATCTAACAAGCCTTGTTCGGTTGGATTTGTCATCTAATGAGTTTTTTGGGGAAATTCCTGATGTTTTTTACGACTCTGTGAATTTGAGTTACTTTGTTGCTGAGTCTAATAGGTTTAGTGGGAAGATTCCCAATTCCTTGTCACACTCTGCTTCACTTACTGTCCTAAATTTGAGGAACAATTCAATAGGGGGAACTCTTGATCTTAATTGTACAGCAACGAGGAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCATGGATCTATACCTAGTAATCTTCCCTCTTGTACCAAACTGAGAAGCATAAACCTTGCTAGGAACAAGCTTGGCGGTCAGATCCCTGAGAGCTTTAGAAACTTTCAGAGCCTATCATATTTATCACTTACGAACACGAGCATTGTTAATGTTTCATCTGCTCTTAATGTCTTGCAACATTGTCAAAATTTGAGAACTGTGGTTCTAACCTTTAACTTCCATGGTGAAGTGTTGGGGGATGATCCTAACTTGAATTTCAACAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATGATACCCCAGTGGTTGAGAGGTTCTAATAAGTTGCAGATGTTGGATTTGTCATGGAACCGTCTTGGAGGAAATATTCCATCCTGGTTTGGAGAGTTTCAGTTCTTGTTTTACTTGGATTTATCTAACAATTCATTCATCGGAGGTATCCCAAAAGAGATGACTGAAATGCAGAGTTACATTGACAGAAACTTCTTGCTTGATGAAACTGCCTCACCGGACTTTTCTCTTTTCGTGAAAAGAAATGGAACTGGATTGCAGTATAATCAATTATGGAGACTTCCACCAACTTTGAACCTCAGTCTCAACAATCTCAGTGGACAAATCTGGCCAGAGTTTGGAAATCTTAAGGAGATTCTAGTTCTTGATTTGAAAATCAACAGTTTGTCAGGATCAATTCCGAGCAGCCTCTCTGGGATGGTTAATTTAGAAACTCTAGATCTTTCTCACAACAATCTTTCAGGAATAATTCCACCTTCACTGCAAAAGCTCAATTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTACATGGGACGATTCTTAAAGGAGGTCAGTTTCATACCTTTGGTAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCAAGACGACCTCTGTGCATCAATTGACCGAGATCCTCTCAGAGTATCCCGCAAATCAAGAACGGTCAAGGGGTCTCTTATAGGTATAATTCTTGGTATTATCTTTGGAATCATTTTTCTTGCAACACTTGTAGTTGTGTTTATGCTTCGCACACCACGGGGAAGAGTTGGAGATCCTGAAAATGAAGTGTCTAACATTGACAATAATGACTCGGAGGAAGTCAAGGCAGGATTGGTAGTTTTTTTCCAAAACAACAACAATGGAAGTCTCTCGCTGGATGATATTTTGAAATCGACGAATGACTTTGATCAAGAAAATATCATTGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCCACCCTTCCTGATGGTAGAAAGGTCGCTATAAAACGGTTGTCTGGTGATTGTGGTCAAATGGACAGAGAATTTCAAGCAGAAATCGAAACGCTTTCACGTGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGTTATTGTATGTATAAGAATGACAGGCTTTTGATTTATTCGTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTTATGGCCCATCTTGCCTCGACTGGGATACCAGACTGCAGATTGCCCGAGGGGCTGCTGGGGGGCTGGCTTATTTGCATCAATCCTGTGAACCCCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACGAAAATTTTAAAGCTCATTTAGCTGATTTTGGTCTTGCTAGACTTATTCTTCCTTATGATACCCACGTAACAACCGATCTTGTCGGTACCTTGGGCTACATTCCACCCGAGTACGGACAATCCTCGGTTGCGACCTACAAAGGGGATGTATACAGTTTTGGAGTTGTTTTATTAGAGCTTTTGACTGGTAAAAGGCCAATCGATATGTGCAGACCGAAAGGACTTCGAGACTTGATCTCTTGGGTGTTCCAAATGAGGAAAGACACAAAAGTAAGTGAAGTGTTCGACCCATTAGTATACGACAAGAAGAATGAGACATCAATGGCCGAAGTTCTTGATATTGCATGTCTTTGCTTATGTAAGGAACCTAAAGAGAGGCCTTCTACTCAACAGCTAGTTTCTTGGCTTGATAAAGGCAGCCGCCGCCGGTGGGTAATTTCGATACAGGGTTTTTCAGCTATGGCGCCTAAAGCTGACAGCACCAAAAAGGCTGATCCCAAAGCTCAAGCCCTGAAGACTGCCAAGGTAGTCAAGTCTGGGCCAACTTTCAAGAAGAAGGCTAAGAAAATCAGGACGTCGGTCACATTCCATCGCCCGAAAACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTAGGAACAAGTTGGATCAATATCAAATTCTTAAATATCCACTAACCACCGAGTCTGCGATGAAGAAAATTGAGGATAATAACACCCTTGTTTTTATTGTCGATATTCGTGCTGACAAGAAAAAGATTAAAGATGCGGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACTCTAATCAGGCCTGATGGAACAAAGAAGGCATACGTTAGGTTAACCCCAGACTACGACGCTTTGGACGTGGCGAACAAGATTGGAATTATCTAA 3432 41.35 MCHSTDSTALQDFRRSFSSQIDGLHTNCSTNCCTCTGVTCDSSGRVVKIELGGRKLVGRLPISIARLERLRVLNLSSNSLTGSIPLALFQLPYLEVLDLSFNRFLGSISTGNIDLPSLRILNVSYNSFNGVLPFGVCVNSSRIEILNLGFNDFVGMFPFQLAECVSLKRLHLESNFISGGIPDEVFGLRKLTHLCVQNNKLSGSLSSVVGNLTSLVRLDLSSNEFFGEIPDVFYDSVNLSYFVAESNRFSGKIPNSLSHSASLTVLNLRNNSIGGTLDLNCTATRSLVTLDLGSNRFHGSIPSNLPSCTKLRSINLARNKLGGQIPESFRNFQSLSYLSLTNTSIVNVSSALNVLQHCQNLRTVVLTFNFHGEVLGDDPNLNFNSLQVFIIANCGLKGMIPQWLRGSNKLQMLDLSWNRLGGNIPSWFGEFQFLFYLDLSNNSFIGGIPKEMTEMQSYIDRNFLLDETASPDFSLFVKRNGTGLQYNQLWRLPPTLNLSLNNLSGQIWPEFGNLKEILVLDLKINSLSGSIPSSLSGMVNLETLDLSHNNLSGIIPPSLQKLNFLSKFSVAYNQLHGTILKGGQFHTFGNSSFEGNNFCVQDDLCASIDRDPLRVSRKSRTVKGSLIGIILGIIFGIIFLATLVVVFMLRTPRGRVGDPENEVSNIDNNDSEEVKAGLVVFFQNNNNGSLSLDDILKSTNDFDQENIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFQAEIETLSRAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPYGPSCLDWDTRLQIARGAAGGLAYLHQSCEPHILHRDIKSSNILLDENFKAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQMRKDTKVSEVFDPLVYDKKNETSMAEVLDIACLCLCKEPKERPSTQQLVSWLDKGSRRRWVISIQGFSAMAPKADSTKKADPKAQALKTAKVVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 1143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1197317 1205854 - CePI673135_11g000970.1 Cec11g0097 215309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0097 1143 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec11g0097 1143 ProSitePatterns Protein kinases ATP-binding region signature. 708 730 IPR017441 GO:0005524(InterPro)
Cec11g0097 1143 Gene3D Ribonuclease Inhibitor 3 279 IPR032675 -
Cec11g0097 1143 FunFam Leucine-rich repeat receptor-like protein kinase 778 982 - -
Cec11g0097 1143 Pfam Leucine rich repeat 285 345 IPR001611 GO:0005515(InterPro)
Cec11g0097 1143 SUPERFAMILY L domain-like 43 133 - -
Cec11g0097 1143 SUPERFAMILY L domain-like 142 457 - -
Cec11g0097 1143 FunFam 60S ribosomal protein L23a 1023 1143 - -
Cec11g0097 1143 Pfam Leucine Rich repeats (2 copies) 69 109 IPR025875 -
Cec11g0097 1143 Pfam Protein kinase domain 703 970 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g0097 1143 Pfam Leucine Rich Repeat 434 452 IPR001611 GO:0005515(InterPro)
Cec11g0097 1143 Pfam Leucine Rich Repeat 409 430 IPR001611 GO:0005515(InterPro)
Cec11g0097 1143 Pfam Leucine Rich Repeat 540 562 IPR001611 GO:0005515(InterPro)
Cec11g0097 1143 Pfam Leucine Rich Repeat 214 233 IPR001611 GO:0005515(InterPro)
Cec11g0097 1143 PRINTS Leucine-rich repeat signature 70 83 - -
Cec11g0097 1143 PRINTS Leucine-rich repeat signature 538 551 - -
Cec11g0097 1143 SUPERFAMILY L domain-like 484 599 - -
Cec11g0097 1143 FunFam Tyrosine-sulfated glycopeptide receptor 1 281 610 - -
Cec11g0097 1143 Gene3D Phosphorylase Kinase; domain 1 662 777 - -
Cec11g0097 1143 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 359 975 IPR051564 GO:0016020(PANTHER)
Cec11g0097 1143 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 184 277 - -
Cec11g0097 1143 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1061 1136 IPR012678 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cec11g0097 1143 ProSiteProfiles Leucine-rich repeat profile. 540 561 IPR001611 GO:0005515(InterPro)
Cec11g0097 1143 SMART serkin_6 702 973 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g0097 1143 Pfam Ribosomal protein L23 1062 1123 IPR013025 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cec11g0097 1143 Gene3D Ribonuclease Inhibitor 280 607 IPR032675 -
Cec11g0097 1143 Gene3D - 1024 1143 IPR012677 -
Cec11g0097 1143 Pfam Ribosomal protein L23, N-terminal domain 1003 1052 IPR005633 -
Cec11g0097 1143 SUPERFAMILY Protein kinase-like (PK-like) 686 973 IPR011009 -
Cec11g0097 1143 ProSitePatterns Ribosomal protein L23 signature. 1121 1136 IPR001014 GO:0019843(InterPro)
Cec11g0097 1143 FunFam Leucine-rich repeat receptor protein kinase MSP1 664 777 - -
Cec11g0097 1143 Hamap Large ribosomal subunit protein uL23 [rplW]. 1063 1143 IPR013025 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cec11g0097 1143 SMART LRR_typ_2 115 139 IPR003591 -
Cec11g0097 1143 SMART LRR_typ_2 67 91 IPR003591 -
Cec11g0097 1143 SMART LRR_typ_2 188 211 IPR003591 -
Cec11g0097 1143 SMART LRR_typ_2 284 308 IPR003591 -
Cec11g0097 1143 SMART LRR_typ_2 212 235 IPR003591 -
Cec11g0097 1143 SMART LRR_typ_2 538 561 IPR003591 -
Cec11g0097 1143 Gene3D Transferase(Phosphotransferase) domain 1 778 984 - -
Cec11g0097 1143 ProSiteProfiles Protein kinase domain profile. 702 982 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0712 Cec-Chr1:7917253 Cec11g0097 Cec-Chr11:1197317 1.30E-34 dispersed
Cec03g0402 Cec-Chr3:4411811 Cec11g0097 Cec-Chr11:1197317 5.20E-53 dispersed
Cec05g0956 Cec-Chr5:8355589 Cec11g0097 Cec-Chr11:1197317 3.40E-81 dispersed
Cec07g0349 Cec-Chr7:3353889 Cec11g0097 Cec-Chr11:1197317 4.10E-77 dispersed
Cec08g0911 Cec-Chr8:20954107 Cec11g0097 Cec-Chr11:1197317 3.40E-63 dispersed
Cec09g0355 Cec-Chr9:2971279 Cec11g0097 Cec-Chr11:1197317 4.50E-135 dispersed
Cec09g2123 Cec-Chr9:38222773 Cec11g0097 Cec-Chr11:1197317 6.00E-78 dispersed
Cec11g0097 Cec-Chr11:1197317 Cec11g0552 Cec-Chr11:6039190 6.70E-73 dispersed
Cec11g0097 Cec-Chr11:1197317 Cec05g1101 Cec-Chr5:9724841 7.20E-144 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72372 PF00069 Pkinase 4.50E-46 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0097 K27625 - csv:116404121 1646.33