Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec11g0170 | ATGGGTTTTCTTGTTCTTCTTATTGCATTTTCTTCTGATGCTTTTCATCCTCCATTTCTTCTTCCTTCCTTTTTTTCGATTTCCTTAACCATTTCTTGCTGTTTGATTCTTCTTTTTCCGAATTCAAGCTTAAAAAGTGAGCTCTGGATTCCAGCAAATATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGATTTTAAAGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGATGTCGAAGAATTTTATCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTTTATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCCTGGCTTCTGGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCGGACAGGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGCGAGGTTCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGATGAGGACGAGGGACTGGACGAGGAAGATGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGTGGGGAGAATTATGCATCAGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAGTACAAATGCCCCTCGTGCAGCAATAAGAGAGCACGACCCTGA | 915 | 45.03 | MGFLVLLIAFSSDAFHPPFLLPSFFSISLTISCCLILLFPNSSLKSELWIPANMDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQLCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKLSKGLAKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1873021 | 1875688 | + | CePI673135_11g001700.1 | Cec11g0170 | 215382 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec11g0170 | 304 | PANTHER | CPG BINDING PROTEIN | 60 | 303 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cec11g0170 | 304 | SUPERFAMILY | FYVE/PHD zinc finger | 240 | 301 | IPR011011 | - | |
Cec11g0170 | 304 | CDD | PHD_AL_plant | 250 | 300 | IPR044104 | - | |
Cec11g0170 | 304 | ProSitePatterns | Zinc finger PHD-type signature. | 251 | 297 | IPR019786 | - | |
Cec11g0170 | 304 | MobiDBLite | consensus disorder prediction | 198 | 217 | - | - | |
Cec11g0170 | 304 | MobiDBLite | consensus disorder prediction | 198 | 244 | - | - | |
Cec11g0170 | 304 | Pfam | Alfin | 64 | 191 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cec11g0170 | 304 | FunFam | PHD finger alfin-like protein | 243 | 299 | - | - | |
Cec11g0170 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 241 | 299 | IPR013083 | - | |
Cec11g0170 | 304 | ProSiteProfiles | Zinc finger PHD-type profile. | 248 | 300 | IPR019787 | - | |
Cec11g0170 | 304 | SMART | PHD_3 | 250 | 298 | IPR001965 | - | |
Cec11g0170 | 304 | Pfam | PHD-finger | 251 | 297 | IPR019787 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec07g0476 | Cec-Chr7:5112297 | Cec11g0170 | Cec-Chr11:1873021 | 9.40E-47 | dispersed | |
Cec10g2211 | Cec-Chr10:36517318 | Cec11g0170 | Cec-Chr11:1873021 | 1.30E-85 | dispersed | |
Cec08g1020 | Cec-Chr8:22143498 | Cec11g0170 | Cec-Chr11:1873021 | 3.40E-126 | transposed | |
Cec10g0733 | Cec-Chr10:10707031 | Cec11g0170 | Cec-Chr11:1873021 | 4.60E-99 | transposed | |
Cec11g0170 | Cec-Chr11:1873021 | Cec03g1587 | Cec-Chr3:33977808 | 1.10E-22 | wgd | |
Cec11g0170 | Cec-Chr11:1873021 | Cec09g0082 | Cec-Chr9:715298 | 5.30E-110 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30485 | PF12165 | Alfin | 1.40E-69 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec11g0170 | K26274 | - | rcu:8272513 | 460.685 |