Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0170 ATGGGTTTTCTTGTTCTTCTTATTGCATTTTCTTCTGATGCTTTTCATCCTCCATTTCTTCTTCCTTCCTTTTTTTCGATTTCCTTAACCATTTCTTGCTGTTTGATTCTTCTTTTTCCGAATTCAAGCTTAAAAAGTGAGCTCTGGATTCCAGCAAATATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGATTTTAAAGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGATGTCGAAGAATTTTATCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTTTATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCCTGGCTTCTGGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCGGACAGGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGCGAGGTTCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGATGAGGACGAGGGACTGGACGAGGAAGATGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGTGGGGAGAATTATGCATCAGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAGTACAAATGCCCCTCGTGCAGCAATAAGAGAGCACGACCCTGA 915 45.03 MGFLVLLIAFSSDAFHPPFLLPSFFSISLTISCCLILLFPNSSLKSELWIPANMDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQLCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKLSKGLAKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1873021 1875688 + CePI673135_11g001700.1 Cec11g0170 215382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0170 304 PANTHER CPG BINDING PROTEIN 60 303 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cec11g0170 304 SUPERFAMILY FYVE/PHD zinc finger 240 301 IPR011011 -
Cec11g0170 304 CDD PHD_AL_plant 250 300 IPR044104 -
Cec11g0170 304 ProSitePatterns Zinc finger PHD-type signature. 251 297 IPR019786 -
Cec11g0170 304 MobiDBLite consensus disorder prediction 198 217 - -
Cec11g0170 304 MobiDBLite consensus disorder prediction 198 244 - -
Cec11g0170 304 Pfam Alfin 64 191 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cec11g0170 304 FunFam PHD finger alfin-like protein 243 299 - -
Cec11g0170 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 299 IPR013083 -
Cec11g0170 304 ProSiteProfiles Zinc finger PHD-type profile. 248 300 IPR019787 -
Cec11g0170 304 SMART PHD_3 250 298 IPR001965 -
Cec11g0170 304 Pfam PHD-finger 251 297 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0476 Cec-Chr7:5112297 Cec11g0170 Cec-Chr11:1873021 9.40E-47 dispersed
Cec10g2211 Cec-Chr10:36517318 Cec11g0170 Cec-Chr11:1873021 1.30E-85 dispersed
Cec08g1020 Cec-Chr8:22143498 Cec11g0170 Cec-Chr11:1873021 3.40E-126 transposed
Cec10g0733 Cec-Chr10:10707031 Cec11g0170 Cec-Chr11:1873021 4.60E-99 transposed
Cec11g0170 Cec-Chr11:1873021 Cec03g1587 Cec-Chr3:33977808 1.10E-22 wgd
Cec11g0170 Cec-Chr11:1873021 Cec09g0082 Cec-Chr9:715298 5.30E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30485 PF12165 Alfin 1.40E-69 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0170 K26274 - rcu:8272513 460.685