Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0201 ATGATCGTCGGCGAGCAGCCCAAACGCCCCAATCCGACGGTTCAGGTTCCACCGTGGACGTTTATGGAGAATTCGGTGATGGATGTGTACAGTCATTCGCCAGGGAGCGGTGGCAGCAGTGGTTCCGTTAAGTGTGACGGATGTTCCAGCGGAGGCGGATACTCTCCTTATTATCTGCAGGAAGCGTTGGCGATGCTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATTTTGATGTTTCAGGTCGGGAGTTGGATTCTCCGGTGGATGCGTACTCTTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTACGAGAGGACGATCGCACGACTGGACTGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAGGTATTACTATTCAGGTACGGCATGTGCGGATTTTCGGAAAGGGAGCTGTATGAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGCTATCGGACTCAGCCATGCAAGGATGGGACGAGTTGTCGGAGAAGAGTTTGTTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTTTGCCTCAACAAAGCCCTCGGAGTACGAGTTCCATCCCTTCGTACGATGGATCGCCTCTCCGGCAAGCAATCGAGGCCTGTGCAAAGCAAATGCCCTATTTATCTTCTCCAGGAACATCGCCCCCAGTATCTCCTCGAATCGAGTCTCCACCTCAATCGCCGATGATTAAGTCACTAAATCGACCTCACGCAACAAGTTCGATCAACGAAATGGTTGCATCACTGCGAAGTTTACAGCTCAATAAGGAACTCTGTAAGGTACAATCTCCTCCTTCCTCGTGGAATGTTCAAGTTGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCGCTAGATCCGGTTTATGTAGCCTTCCAGAAACTCCGACTCGTCCAGTTACCCGTTATCTCGATTTCTGGGACCTAGGCTGCGGAGAGGAACCGGCGATGGAGCGAGTGGAGTCCGGAAGAGATCTTCGTGCAAAAATGTTTGAAAAATTGAGGAAGGAGAACTCCGTCGGGTGCGGCGATCAAGACAAATGCAGCGGCGGCGGAGGTCTGGATGTCGGTTGGATCTCGGAGCTCCTCAAGTAA 1179 51.99 MIVGEQPKRPNPTVQVPPWTFMENSVMDVYSHSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDFDVSGRELDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSPGTSPPVSPRIESPPQSPMIKSLNRPHATSSINEMVASLRSLQLNKELCKVQSPPSSWNVQVGSPVFGSPKESTARSGLCSLPETPTRPVTRYLDFWDLGCGEEPAMERVESGRDLRAKMFEKLRKENSVGCGDQDKCSGGGGLDVGWISELLK 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2165280 2166458 - CePI673135_11g002010.1 Cec11g0201 215413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0201 392 Gene3D - 103 165 - -
Cec11g0201 392 SUPERFAMILY CCCH zinc finger 138 168 IPR036855 GO:0046872(InterPro)
Cec11g0201 392 PANTHER UNKEMPT FAMILY MEMBER 55 392 IPR045234 -
Cec11g0201 392 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872(InterPro)
Cec11g0201 392 FunFam Zinc finger CCCH domain-containing protein 66 97 165 - -
Cec11g0201 392 SMART c3hfinal6 139 165 IPR000571 GO:0046872(InterPro)
Cec11g0201 392 SMART c3hfinal6 174 197 IPR000571 GO:0046872(InterPro)
Cec11g0201 392 MobiDBLite consensus disorder prediction 237 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1948 Cec-Chr5:31562905 Cec11g0201 Cec-Chr11:2165280 7.20E-87 dispersed
Cec07g0293 Cec-Chr7:2865718 Cec11g0201 Cec-Chr11:2165280 3.80E-57 dispersed
Cec07g1815 Cec-Chr7:33863386 Cec11g0201 Cec-Chr11:2165280 5.00E-46 dispersed
Cec08g1743 Cec-Chr8:28576288 Cec11g0201 Cec-Chr11:2165280 2.90E-63 dispersed
Cec10g1729 Cec-Chr10:31956179 Cec11g0201 Cec-Chr11:2165280 1.40E-50 dispersed
Cec11g0201 Cec-Chr11:2165280 Cec03g1649 Cec-Chr3:34662962 1.70E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30488 None None None None Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0201 - - - 0.0