Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0213 ATGTCGTGGCAAGTTTACGTCGATGATCATTTGATGTGCGAAATTGAGGGCAATCACCTCACGTCTGCGGCCATTATCGGCCAAGACGGCAGTGTTTGGGCTAAAAGCGAAAATTTCCCTCAGCTCAAGCCTGAAGAAATTACTGGCATCTTGAATGACTTCAATGAACCCGGGACGCTTGCTCCGACTGGTTTGTACATTGGTGGTTCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGCCCTGGCTTTAGTCATTGGCATCTATGATGAACCAATGACTCCTGGGCCTCTAAATATCGGGAAACCGCTTATTGTTTGTACAAGTCTATGGACTCTTGAATGGAAATGGGTTTGA 408 46.81 MSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAKSENFPQLKPEEITGILNDFNEPGTLAPTGLYIGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTALALVIGIYDEPMTPGPLNIGKPLIVCTSLWTLEWKWV 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2307322 2308813 + CePI673135_11g002130.1 Cec11g0213 215425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0213 135 SUPERFAMILY Profilin (actin-binding protein) 2 116 IPR036140 -
Cec11g0213 135 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cec11g0213 135 PANTHER PROFILIN 1 116 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cec11g0213 135 CDD PROF 2 116 IPR005455 GO:0003779(InterPro)
Cec11g0213 135 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Cec11g0213 135 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cec11g0213 135 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Cec11g0213 135 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Cec11g0213 135 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Cec11g0213 135 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cec11g0213 135 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cec11g0213 135 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cec11g0213 135 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Cec11g0213 135 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Cec11g0213 135 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cec11g0213 135 FunFam Profilin 1 118 - -
Cec11g0213 135 Pfam Profilin 1 116 IPR048278 GO:0003779(InterPro)
Cec11g0213 135 Gene3D Dynein light chain 2a, cytoplasmic 2 119 - -
Cec11g0213 135 SMART prof_2 1 126 IPR005455 GO:0003779(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0213 K05759 - - cit:102628130 217.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec11g0213 Cec-Chr11:2307322 Cec11g1559 Cec-Chr11:29869735 6.70E-49 dispersed
Cec11g0212 Cec-Chr11:2303911 Cec11g0213 Cec-Chr11:2307322 1.30E-49 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g252 . Blo16g01002 Bda01g02037 Bda11g01079 . . . Bma11g00546 . . Cma05g01374 . Car05g01288 . . . . . . . . . . . Cla11g00182 Cam11g0212 Cec11g0213 Cco11g0226 Clacu11g0347 Cmu11g0197 Cre11g0695 . . Cone4ag0755 . . Csa02g00080 Chy05g01409 . . Blo14g00527 . Bda09g01121 . Bpe13g01272 Bma01g00212 Bma06g00836 Sed11g0036 Cmo05g01377 Cmo12g01309 . . . . Cpe11g01144 Cpe07g01035 Bhi06g01687 Tan08g0108 Cmetu05g1709 . . . . . . . . . . . Lsi11g00217 . . Cme05g02013
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT2G37620 96.8 7.5e-215 743.0
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.7e-214 740.7
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 738.4
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.7e-212 734.6
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT2G37620 97.2 4.1e-205 710.7
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT2G37620 95.6 3.9e-203 704.1
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.2e-200 693.7
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 4.9e-214 740.3
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT5G59370 97.1 6.4e-214 740.0
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 8.6e-211 729.6
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT5G59370 96.9 3.9e-203 704.1
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT5G59370 94.4 5.2e-200 693.7
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT5G59370 94.7 7.1e-197 683.3
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.2e-214 741.5
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.4e-214 740.0
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT3G46520 97.2 1.7e-203 705.3
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT3G46520 94.7 2.4e-200 694.9
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.2e-197 684.5
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.4e-215 743.8
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.1e-213 737.3
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT3G12110 96.9 2.1e-204 708.4
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT3G12110 95.6 1.5e-202 702.2
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT3G12110 95.8 2.0e-199 691.8
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 6.2e-209 723.4
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.3e-208 721.5
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 8.9e-208 719.5
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT3G18780 93.6 2.0e-199 691.8
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT3G18780 93.1 3.4e-199 691.0
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.6e-196 680.6
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 2.1e-209 724.9
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT1G49240 92.6 6.2e-209 723.4
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.1e-209 723.0
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT1G49240 93.6 2.0e-199 691.8
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT1G49240 93.1 3.4e-199 691.0
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.6e-196 682.2
Cec09g1439 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cec10g1770 . 91 467 Cytoskeleton Gene Families AT5G09810 96.6 6.4e-214 740.0
Cec02g2127 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cec07g0364 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cec09g2081 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 7.8e-212 733.0
Cec02g0074 . 1 360 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-206 715.7
Cec04g0957 . 1 360 Cytoskeleton Gene Families AT5G09810 96.7 1.0e-203 706.1
Cec04g1250 . 1 356 Cytoskeleton Gene Families AT5G09810 98.6 3.0e-203 704.5
Cec11g0212 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.6e-57 216.5
Cec09g0023 . 241 371 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Cec07g1455 . 532 662 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cec11g1559 . 305 435 Cytoskeleton Gene Families AT2G19760 72.5 4.4e-53 204.1
Cec11g0213 . 1 117 Cytoskeleton Gene Families AT2G19760 76.9 7.8e-50 193.4
Cec11g0212 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cec09g0023 . 241 371 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cec07g1455 . 532 662 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cec11g1559 . 305 435 Cytoskeleton Gene Families AT4G29350 70.2 9.2e-51 196.4
Cec11g0213 . 1 117 Cytoskeleton Gene Families AT4G29350 76.9 1.1e-48 189.5
Cec11g0213 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.6e-38 153.7
Cec11g0212 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cec09g0023 . 241 371 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Cec11g1559 . 305 435 Cytoskeleton Gene Families AT4G29340 72.4 1.5e-53 205.7
Cec07g1455 . 532 662 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Cec11g0213 . 1 117 Cytoskeleton Gene Families AT4G29340 65.8 2.9e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112