Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0235 ATGGCCGACGCCACCGTACCGGAGACCGACTCCGGTGGCAGCGCCAATTCCTGGTCCTCGTCTTCTTCCTCGACGTCGTGTTCGATCTCGTCTCCGTCGAAACAAGTCGGTAGCCGAACGTCGTCGAAGCGGAGTCGAGAGAGTAGCAACAATAGTCGTCACCCAAGTTACCGAGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCGAAGAAGAAGAGTCGGATCTGGCTCGGCACCTTCGCCACACCCGACATGGCGGCACGTGCTCACGACGTAGCCGCCCTTACTATCAAAGGCAATTCAGCCATCCTCAATTTCCCTGAACTCGCAGCCTCATTACCCCGCCCCGCCTCCTCGTCCCCTCGGGACGTTCAATCTGCCGCCGCCCTCGCTGCTTCAATGCAACTTCCTGACGTCGTCTCACCTCCTCCACCACCGCCACCCCCACCCTCATCGCCTCCCTTCTCGTCATCGTCCGAGTTGGACGAGTCGACACCGGAGGAATTGAGTGAAATTGTGGTGCTGCCCAGTTTGGGAACGGGGTACGAGGAATCGGCCGAGTCAGTGACCGAGTTTGTGTTTGACGAGTGGCAATATAGCTATGAGCCGTGGGATCAACAAAATCAAAGCTCAAAAGAGGAAGAAGAAGAAGCTTATGAGTACTTTATAGATCAAATGGCAATGGCGGAAAAAGAGTGTGTGATTCCCACTGCATTATTTCATCCTTTACCTTTCTCGTGGTAA 762 55.38 MADATVPETDSGGSANSWSSSSSSTSCSISSPSKQVGSRTSSKRSRESSNNSRHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPDVVSPPPPPPPPPSSPPFSSSSELDESTPEELSEIVVLPSLGTGYEESAESVTEFVFDEWQYSYEPWDQQNQSSKEEEEEAYEYFIDQMAMAEKECVIPTALFHPLPFSW 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2512522 2513283 - CePI673135_11g002350.1 Cec11g0235 215447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0235 253 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g0235 253 SMART rav1_2 56 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g0235 253 Coils Coil 218 238 - -
Cec11g0235 253 MobiDBLite consensus disorder prediction 142 176 - -
Cec11g0235 253 Pfam AP2 domain 55 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g0235 253 MobiDBLite consensus disorder prediction 9 45 - -
Cec11g0235 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 39 201 IPR051032 -
Cec11g0235 253 CDD AP2 55 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g0235 253 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g0235 253 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g0235 253 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g0235 253 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677(InterPro)
Cec11g0235 253 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Cec11g0235 253 MobiDBLite consensus disorder prediction 1 60 - -
Cec11g0235 253 MobiDBLite consensus disorder prediction 144 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0152 Cec-Chr8:2914168 Cec11g0235 Cec-Chr11:2512522 8.40E-27 dispersed
Cec10g0252 Cec-Chr10:2843932 Cec11g0235 Cec-Chr11:2512522 1.30E-36 dispersed
Cec11g0235 Cec-Chr11:2512522 Cec11g1573 Cec-Chr11:30021244 5.30E-39 dispersed
Cec11g0235 Cec-Chr11:2512522 Cec06g0984 Cec-Chr6:14046733 2.90E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30490 PF00847 AP2 7.40E-13 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0235 K09286 - csv:101212945 339.347