Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0313 ATGGTGCCATCAAAGAAGTTTAGAGGTGTTAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCACCCCCTTCTGAAGAGAAGGGTTTGGTTGGGGACATTTGAGACGGCGGAGGAAGCAGCGAGAGCCTACGACCAGGCCGCCCTGTTAATGAGCGGCCGGAACGCAAAAACCAACTTCCCGATGAGCCAAACGGCTCCGCCGGAATTAGAAAAACCCGACAATAACAATAATATCACTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTTCGAAAATGCAGCAAGGCACCGTCGCCGTCGATGACGTGTCTCCGACTCGACATTGAAAATTCCCACATCGGGGTTTGGCAGAAACGCGCCGGCCAACGCTCCGACTCCAGTTGGGTCATGACCGTTCATCTCGGAAAAACCAACTCCACCTCCGCCACCTCCGCCGCCGCCGGAGCCGCATCCGCATCCGGCGGCGACGACGACGGTGAGCAGTTGAGGAAGAATAAAAAAAGTGGGTGTTTTTCCGGTTTGATCTCGTCGGAAGGTGGTGCCGGTGCATTAATGGCGGCGAGTGGGACCCACATGAAGAACTTGGAGATGGATGAAGAAGAAGAAAGAATTGCATTGCAAATGATTGAAGAGTTGCTGAGCAGAAATTATGGTAACCCATCTGAAATTATTCAAGTTCAAGAGCATGATCAAGGGAAGCAACCTTTTTACCCTCTCTAA 735 51.56 MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAALLMSGRNAKTNFPMSQTAPPELEKPDNNNNITSPKGLSEILHAKLRKCSKAPSPSMTCLRLDIENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSTSATSAAAGAASASGGDDDGEQLRKNKKSGCFSGLISSEGGAGALMAASGTHMKNLEMDEEEERIALQMIEELLSRNYGNPSEIIQVQEHDQGKQPFYPL 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3367401 3368928 - CePI673135_11g003130.1 Cec11g0313 215525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0313 244 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g0313 244 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g0313 244 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cec11g0313 244 Pfam AP2 domain 6 54 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g0313 244 MobiDBLite consensus disorder prediction 144 169 - -
Cec11g0313 244 Coils Coil 197 217 - -
Cec11g0313 244 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g0313 244 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g0313 244 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g0313 244 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 138 IPR050913 -
Cec11g0313 244 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec11g0313 244 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g0321 Cec-Chr9:2668535 Cec11g0313 Cec-Chr11:3367401 2.60E-25 dispersed
Cec11g0313 Cec-Chr11:3367401 Cec11g1592 Cec-Chr11:30255730 5.00E-18 dispersed
Cec11g0313 Cec-Chr11:3367401 Cec05g1866 Cec-Chr5:30743518 7.40E-54 wgd
Cec11g0313 Cec-Chr11:3367401 Cec06g1284 Cec-Chr6:26016939 4.50E-59 wgd
Cec11g0313 Cec-Chr11:3367401 Cec07g1388 Cec-Chr7:29477260 3.30E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30497 PF00847 AP2 7.20E-13 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0313 - - - 0.0