Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0318 ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCATCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCATTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACCGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGGCAGGGCTGCACTATTGA 579 43.18 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTIRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTTDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVAGLHY 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3430874 3434545 - CePI673135_11g003180.1 Cec11g0318 215530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0318 192 Gene3D High mobility group box domain 102 161 IPR036910 -
Cec11g0318 192 CDD HMG-box_SF 120 156 - -
Cec11g0318 192 Pfam YABBY protein 8 166 IPR006780 GO:0007275(InterPro)
Cec11g0318 192 SUPERFAMILY HMG-box 108 159 IPR036910 -
Cec11g0318 192 PANTHER PROTEIN YABBY 6-RELATED 8 177 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cec11g0318 192 FunFam axial regulator YABBY 5-like 104 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1850 Cec-Chr8:29346030 Cec11g0318 Cec-Chr11:3430874 3.00E-18 dispersed
Cec10g0303 Cec-Chr10:3720703 Cec11g0318 Cec-Chr11:3430874 6.90E-39 dispersed
Cec02g2367 Cec-Chr2:40915706 Cec11g0318 Cec-Chr11:3430874 1.50E-48 transposed
Cec05g2590 Cec-Chr5:36794829 Cec11g0318 Cec-Chr11:3430874 1.80E-30 transposed
Cec05g2609 Cec-Chr5:36913110 Cec11g0318 Cec-Chr11:3430874 1.80E-30 transposed
Cec11g0318 Cec-Chr11:3430874 Cec06g1293 Cec-Chr6:26175656 1.00E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30498 PF04690 YABBY 1.20E-70 CL0114 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0318 K25796 - csv:101219877 388.267