Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec11g0318 | ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCATCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCATTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACCGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGGCAGGGCTGCACTATTGA | 579 | 43.18 | MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTIRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTTDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVAGLHY | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3430874 | 3434545 | - | CePI673135_11g003180.1 | Cec11g0318 | 215530 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec11g0318 | 192 | Gene3D | High mobility group box domain | 102 | 161 | IPR036910 | - | |
Cec11g0318 | 192 | CDD | HMG-box_SF | 120 | 156 | - | - | |
Cec11g0318 | 192 | Pfam | YABBY protein | 8 | 166 | IPR006780 | GO:0007275(InterPro) | |
Cec11g0318 | 192 | SUPERFAMILY | HMG-box | 108 | 159 | IPR036910 | - | |
Cec11g0318 | 192 | PANTHER | PROTEIN YABBY 6-RELATED | 8 | 177 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
Cec11g0318 | 192 | FunFam | axial regulator YABBY 5-like | 104 | 162 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec08g1850 | Cec-Chr8:29346030 | Cec11g0318 | Cec-Chr11:3430874 | 3.00E-18 | dispersed | |
Cec10g0303 | Cec-Chr10:3720703 | Cec11g0318 | Cec-Chr11:3430874 | 6.90E-39 | dispersed | |
Cec02g2367 | Cec-Chr2:40915706 | Cec11g0318 | Cec-Chr11:3430874 | 1.50E-48 | transposed | |
Cec05g2590 | Cec-Chr5:36794829 | Cec11g0318 | Cec-Chr11:3430874 | 1.80E-30 | transposed | |
Cec05g2609 | Cec-Chr5:36913110 | Cec11g0318 | Cec-Chr11:3430874 | 1.80E-30 | transposed | |
Cec11g0318 | Cec-Chr11:3430874 | Cec06g1293 | Cec-Chr6:26175656 | 1.00E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30498 | PF04690 | YABBY | 1.20E-70 | CL0114 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec11g0318 | K25796 | - | csv:101219877 | 388.267 |