Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0318 ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCATCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCATTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACCGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGGCAGGGCTGCACTATTGA 579 43.18 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTIRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTTDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVAGLHY 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3430874 3434545 - CePI673135_11g003180.1 Cec11g0318 215530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0318 192 Gene3D High mobility group box domain 102 161 IPR036910 -
Cec11g0318 192 CDD HMG-box_SF 120 156 - -
Cec11g0318 192 Pfam YABBY protein 8 166 IPR006780 GO:0007275(InterPro)
Cec11g0318 192 SUPERFAMILY HMG-box 108 159 IPR036910 -
Cec11g0318 192 PANTHER PROTEIN YABBY 6-RELATED 8 177 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cec11g0318 192 FunFam axial regulator YABBY 5-like 104 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0318 K25796 - - csv:101219877 388.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1850 Cec-Chr8:29346030 Cec11g0318 Cec-Chr11:3430874 3.00E-18 dispersed
Cec10g0303 Cec-Chr10:3720703 Cec11g0318 Cec-Chr11:3430874 6.90E-39 dispersed
Cec02g2367 Cec-Chr2:40915706 Cec11g0318 Cec-Chr11:3430874 1.50E-48 transposed
Cec05g2590 Cec-Chr5:36794829 Cec11g0318 Cec-Chr11:3430874 1.80E-30 transposed
Cec05g2609 Cec-Chr5:36913110 Cec11g0318 Cec-Chr11:3430874 1.80E-30 transposed
Cec11g0318 Cec-Chr11:3430874 Cec06g1293 Cec-Chr6:26175656 1.00E-71 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g2590 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 1.9e-46 182.6
Cec05g2609 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 1.9e-46 182.6
Cec01g0381 . 95 255 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.0e-42 169.1
Cec02g2367 . 1 174 C2C2-YABBY Transcription Factor Family AT1G08465 65.9 1.1e-54 209.9
Cec01g0381 . 51 245 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 2.0e-43 172.6
Cec06g1293 . 6 180 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 3.7e-42 168.3
Cec10g0303 . 18 189 C2C2-YABBY Transcription Factor Family AT1G08465 53.5 1.3e-39 159.8
Cec01g0381 . 62 254 C2C2-YABBY Transcription Factor Family AT4G00180 55.0 1.2e-49 193.4
Cec10g0303 . 29 189 C2C2-YABBY Transcription Factor Family AT4G00180 54.9 4.1e-37 151.8
Cec05g2773 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.8 1.9e-39 159.8
Cec06g1293 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 70.4 2.9e-62 235.0
Cec11g0318 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 70.7 5.5e-61 230.7
Cec02g2367 . 1 174 C2C2-YABBY Transcription Factor Family AT2G26580 59.2 1.1e-48 189.9
Cec01g0381 . 53 217 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.1e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30498 PF04690 YABBY 1.20E-70 CL0114 Cec TF