Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0380 ATGGGGGTTCGGTTTCTATCTTTGGTTCCTCATGCCAAGCAAATTCTGAAGATGCAGTCCGGTTTCACCAAAAAACAGTTGGATGTTCCGAAAGGCCATGTGGCAATTTATGTCGGAGAGATCCAAATGACACGGTTCGTGGTTCCAATATCTTACTTAAACCATTCGTCGTTCCAGCAACTGCTCAGCCACGCAGAGGAAGAGTTTGGCTTCCATCATCCTAAAGGGGGCCTAACAATTCCTTGCAAAGAAGATGCCTTCATTGATCTCACTTCTAGATTGCAAGTGCTCAAAAAGCAAGCTCAATCTGATGTTCCGAAAGGTCACATCACAGTTTATGTCAGAGAAATCCAAAGGAAGCAGTTGTTATTTCCGATATCGTTCTTGAACCATCCTACATTCATGGATTTGCTTAAGAGAGCTGAGGAAGAGTTCGGATACAATCATCCAATGAAGATGCTTTCATGGATCTCACTGCAAGGCTACATAGTTCTTGAAAGATTTTGTACAAATAGAAGAAATCCCTTCCATCCACCTCCCAAGTTTTGCTAA 552 42.57 MGVRFLSLVPHAKQILKMQSGFTKKQLDVPKGHVAIYVGEIQMTRFVVPISYLNHSSFQQLLSHAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQVLKKQAQSDVPKGHITVYVREIQRKQLLFPISFLNHPTFMDLLKRAEEEFGYNHPMKMLSWISLQGYIVLERFCTNRRNPFHPPPKFC 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4000737 4002377 - CePI673135_11g003800.1 Cec11g0380 215592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0380 183 Pfam Auxin responsive protein 22 93 IPR003676 GO:0009733(InterPro)
Cec11g0380 183 Pfam Auxin responsive protein 99 151 IPR003676 GO:0009733(InterPro)
Cec11g0380 183 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 99 154 IPR003676 GO:0009733(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0380 K14488 - - vvi:100244422 187.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec11g0380 Cec-Chr11:4000737 Cec11g0387 Cec-Chr11:4028744 7.20E-62 dispersed
Cec11g0380 Cec-Chr11:4000737 Cec11g0381 Cec-Chr11:4005530 1.50E-30 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00341 Cam11g0381 Cec11g0380 . Clacu11g0502 Cmu11g0361 Cre11g0855 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000045 7 14 1 1 5 16 0 0 13 4 12 13 24 19 19 31 17 1 0 16 18 3 0 3 14 20 13 24 12 19 339