Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0420 ATGTTTGCGAAGAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCGGCCCTCTGCGCCGCCTGTGACCGCCACGTCCACCGCGCCAATAAGCTCGCCGAGAAACACAACCGTTTCTCTCTCCTCCAATCCACCTCCGCCGCTGCCAATTCACTGCCGTTGTGCGATATCTGCCAGGTCCGGCGCGCGTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACATCACCAACGATCGAACCCAGAAGCACAACCGGTTTCTTCTCACCGGCGTGAAGGTCTCGCCGTTGCCGTTGGCTTCTTCTACTTCCTCATCCTCCGTCTCAGGCGGCGGCGAAGAAATTGAAGGCGAAATTGGGTTGTTCAAGAGACGCTCGAGGAAGAGGGCTAAAATGGAGGAATTAGAGAAGCCATTGAATGTTGAAGAAAATGGGGTATCAATAAGCAGTATTTGGGAGTATTTGGAGAGTTTGCCTGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCATCTGCTGCTGATATTTTTCTGTAA 561 51.69 MFAKKEEASVFCPSDEAALCAACDRHVHRANKLAEKHNRFSLLQSTSAAANSLPLCDICQVRRAFLFCREDRAILCRECDIPIHITNDRTQKHNRFLLTGVKVSPLPLASSTSSSSVSGGGEEIEGEIGLFKRRSRKRAKMEELEKPLNVEENGVSISSIWEYLESLPGWCVEEFLDSSSAADIFL 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4393937 4394497 - CePI673135_11g004200.1 Cec11g0420 215632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0420 186 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270(InterPro)
Cec11g0420 186 SMART bboxneu5 51 98 IPR000315 GO:0008270(InterPro)
Cec11g0420 186 SMART bboxneu5 4 42 IPR000315 GO:0008270(InterPro)
Cec11g0420 186 PANTHER B-BOX ZINC FINGER PROTEIN 22 4 179 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cec11g0420 186 Pfam B-box zinc finger 53 93 IPR000315 GO:0008270(InterPro)
Cec11g0420 186 CDD Bbox1_BBX-like 55 98 IPR049808 -
Cec11g0420 186 ProSiteProfiles Zinc finger B-box type profile. 1 42 IPR000315 GO:0008270(InterPro)
Cec11g0420 186 CDD Bbox1_BBX-like 4 42 IPR049808 -
Cec11g0420 186 Gene3D Classic Zinc Finger 2 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g1443 Cec-Chr9:21344998 Cec11g0420 Cec-Chr11:4393937 1.70E-31 dispersed
Cec11g0420 Cec-Chr11:4393937 Cec02g0502 Cec-Chr2:4689833 5.30E-44 wgd
Cec11g0420 Cec-Chr11:4393937 Cec08g1502 Cec-Chr8:26751415 1.20E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30502 PF00643 zf-B_box 2.10E-06 No_clan Cec TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0420 - - - 0.0