Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0441 ATGTTCTTATTCTTCATGATTTCGTTGATTGAATTTGAATTTGACCTTTTGTTAGGTAGGGAAGAATCTGGAGGTTTTGGCTGCATTGAATTTCAGGTTCTACCGCACTTCCGTGGAAGTTGGGTGTGCGGGGGAAAATCATTGAAGTCACCACTATTTAGGTTTGGTCAAGTTTTTAGTTCTAATATGGCTGGCGATCCTTTGACAAGCTCTAATGGCAATGCTAATGTAAATGCACCACCTGATCCTCGGAGAACTTATCAAGTTGTTGTAGCTGCTACTGAAAATATGGGCATTGGTAAGGATGGGAAACTACCATGGAGGTTGCCTTCTGATCTCAGCTTTTTTAAAAACATAACCACAACAACATCCGATCATGGGAAAAGGAATGCAGTTCTAATGGGTCGTAAAACATGGGAGAGTATTCCTGCTGAGCATCGGCCACTACCTGGCCGTCTAAATGTTGTTCTGACTCGCTCTGGGAGTTTTGACATTGCGACTGTTGAAAATGTTATTATATGTGGTAGTATAACGTCTGCTTTGGAATTATTAGCAGCTTCTCCTTACTGTTTGTCAATAGAGAAAGTGTTTGTTATAGGCGGTGGTGAGATATTAAGGGAAGCTCTGAATGCCCCTGAATGTGATGCTATCCACATTACTGAAATTGAGACAAATGTTGAATGTGACACCTTCATGCCAGCTATTGATAAGTCTATGTTTCAACCATGGTACTCATCCTTTCCATTGGTGGAAAATAGTTTGCGATATTCGTTCACTAGTTATGTTCGTGTGAGGAGCTCAACTGAATCCTCCATTGATCAGAACAATGGTCTGGACTCTCATAAGAAACCTGATTTTTCTAACTTTGAGGCTAAGAAGTTCTCTTTCCTACCTAAGGAGATCTTTGAGAGGCATGAGGAGTACTTGTACCTAAACCTTGTTCAAGAAATCATCTCAGATGGTATTCCTAAGGATGATAGAACAGGGACAGGTACTTTGTCAAGATTTGGTTGCCAGATGCGGTACAACTTGCGCAAAACTTTCCCGCTGCTTACAACTAAGAAAGTATTTTGGCGGGGGGTTGCTGAAGAACTTCTTTGGTTCATCAGTGGTTCAACTAATGCAAAGGTTCTTCAGGAGAAAGGCATTCATATATGGGATGGCAATGCATCCAGAGATTACCTCGATAGTATTGGTTTAAGAGAAAGAGAGGAAGGCGACTTGGGACCTGTATATGGGTTCCAGTGGCGACACTTTGGTGCTAGGTATACGGACATGCATGCTGACTACACTGGTCAAGGATTTGATCAGTTGCTGGATGTTATTAACAAGATAAAAAATAATCCTGATGACCGGAGGATCATTCTTTCTGCATGGAATCCATCTGATCTCAAACTGATGGCACTTCCTCCTTGCCACATGTTCGCTCAGTTTTATGTAGCGAATGGGGAGTTATCGTGTCAAATGTATCAGCGCTCTGCTGACATGGGCCTTGGTGTTCCATTTAATATTGCATCATATGCTCTTCTGACTTGCATGATTGCTCATGTTTGTGGTCTTGCTCGAGGTGACTTCATTCACGTGATTGGAGATGCTCATGTTTACCGTACTCATGTGAGGCCATTGCAGGAGCAGCTTCAGAAACTCCCCAAACCGTTCCCCATTTTGAAGATAAATCCCGAGAAGAAGGATATCGATTCTTTTGTGGCAGATGATTTTGAACTAACAGGTACAAGCATCACAGAGGCTTTGGTTGATATGAGTGCAGAAATTGTAGTGGCATCTGAGTCCCTCAATTGGGGTTCTTGTTTGGAGATTGGAGTTGGAATTGGATGCCTCTATTCCAAGGACTGCTCATTTGAACAAATTCCCATTCCATTATTACCATTATCTTTCATATTCGATGAAAGCTTGAAGCCTCTTTTCCAAGCTCTTATCCAAATTACTCATTACTCTGATTTTAATTCTCCTTGCGATTCCAATTAG 1986 41.69 MFLFFMISLIEFEFDLLLGREESGGFGCIEFQVLPHFRGSWVCGGKSLKSPLFRFGQVFSSNMAGDPLTSSNGNANVNAPPDPRRTYQVVVAATENMGIGKDGKLPWRLPSDLSFFKNITTTTSDHGKRNAVLMGRKTWESIPAEHRPLPGRLNVVLTRSGSFDIATVENVIICGSITSALELLAASPYCLSIEKVFVIGGGEILREALNAPECDAIHITEIETNVECDTFMPAIDKSMFQPWYSSFPLVENSLRYSFTSYVRVRSSTESSIDQNNGLDSHKKPDFSNFEAKKFSFLPKEIFERHEEYLYLNLVQEIISDGIPKDDRTGTGTLSRFGCQMRYNLRKTFPLLTTKKVFWRGVAEELLWFISGSTNAKVLQEKGIHIWDGNASRDYLDSIGLREREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCGLARGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPILKINPEKKDIDSFVADDFELTGTSITEALVDMSAEIVVASESLNWGSCLEIGVGIGCLYSKDCSFEQIPIPLLPLSFIFDESLKPLFQALIQITHYSDFNSPCDSN 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4656445 4663141 + CePI673135_11g004410.1 Cec11g0441 215653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0441 661 PRINTS Thymidylate synthase family signature 523 540 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cec11g0441 661 PRINTS Thymidylate synthase family signature 467 482 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cec11g0441 661 PRINTS Thymidylate synthase family signature 441 460 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cec11g0441 661 PRINTS Thymidylate synthase family signature 485 511 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cec11g0441 661 PRINTS Thymidylate synthase family signature 348 369 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cec11g0441 661 CDD DHFR 90 262 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cec11g0441 661 PANTHER THYMIDYLATE SYNTHASE 1 109 582 IPR045097 GO:0004146(PANTHER)|GO:0004799(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006231(PANTHER)|GO:0016741(InterPro)
Cec11g0441 661 Pfam Dihydrofolate reductase 88 263 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cec11g0441 661 FunFam Possible thymidylate synthase 301 591 - -
Cec11g0441 661 Pfam Thymidylate synthase 310 577 IPR023451 -
Cec11g0441 661 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 98 120 IPR017925 GO:0004146(InterPro)
Cec11g0441 661 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 86 263 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cec11g0441 661 NCBIfam thymidylate synthase 310 581 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cec11g0441 661 CDD TS_Pyrimidine_HMase 310 543 IPR023451 -
Cec11g0441 661 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 262 578 IPR036926 -
Cec11g0441 661 SUPERFAMILY Dihydrofolate reductase-like 84 263 IPR024072 -
Cec11g0441 661 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 299 587 IPR036926 -
Cec11g0441 661 Hamap Thymidylate synthase [thyA]. 307 593 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cec11g0441 661 ProSitePatterns Thymidylate synthase active site. 452 480 IPR020940 GO:0004799(InterPro)|GO:0006231(InterPro)
Cec11g0441 661 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 69 264 - -
Cec11g0441 661 Gene3D Dihydrofolate Reductase, subunit A 70 265 IPR024072 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0441 K13998 - - csv:101208660 1000.35
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g987 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0127 . . . . . . . Bda01g01504 Bpe02g01702 . Bma01g00752 . . . . . . . . . . . . . . . . . Cla11g00400 Cam11g0445 Cec11g0441 Cco11g0432 Clacu11g0569 Cmu11g0425 Cre11g0909 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43