Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0454 ATGTTGAAGTCGGAGATGACGCCGTCGGCTCGACTCAAACGGCAGCGACCCCATGGCGACTGCCGGAGCTTGTCTTCCGTCTCGACTCCGGCAAGTCGGGTCAACCATTTTGAGGATCTAGTTGCACCCGGAGGTTGGCCCGAGTTAGCTAAGTACGAGATCTCCTCTACGAAGTTTCGAACCAATCAGACGTGTTCACCACTAATAAAGGCGAACTCGGTGGTGGAGGGAGAGATTGCGAAAAAGAGAAAAGGGAAGAAGAAGGAAATGAAATGGAAAGGGAGAGATGATAATAATAATGTTGAATGGGAGAATGGAAGAGAGAAGAAAATGAAAGGAAAGGTTGAAGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGATGAATCAAAGATTACGGAGGAAAGAGAGAGATGGAAATGCAATTCAAAAGCTTCAAAAGAAGTTCAAAAATCGGATTATGTTCATGTGAGAGCACGTCGAGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCTATGAAGGTAGCTGCTCTCAATCACAGAGTTGATTTCATCAATGTAGATGACTTCTTGGCCAAACAGGTGTTTTCGACGTTAACGACCGATTGTTCATCCTACGTTAATCAACTTGGAAAGGGCTCAACCTCTGTAACAGTCCCACAAACTCCATTGATCAATAACAACTTGTCTTCAATTACTCATTTTGAACTGTCTTCAACTTGGGGAGGTGATTTACAAAGGTTTGAAGAAGGAGGGCCTCCATTGTTGTCGCCATCAAGCTTTTTATCGCAGCAATGTTCAGGCATTGAAGATGAAAATGAAACATTATTTTTGGACCACAAACTTGTTCCATTTTAA 1008 42.06 MLKSEMTPSARLKRQRPHGDCRSLSSVSTPASRVNHFEDLVAPGGWPELAKYEISSTKFRTNQTCSPLIKANSVVEGEIAKKRKGKKKEMKWKGRDDNNNVEWENGREKKMKGKVEEDEDEDEDEDEDDESKITEERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQVFSTLTTDCSSYVNQLGKGSTSVTVPQTPLINNNLSSITHFELSSTWGGDLQRFEEGGPPLLSPSSFLSQQCSGIEDENETLFLDHKLVPF 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4814712 4818861 - CePI673135_11g004540.1 Cec11g0454 215666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0454 335 CDD bHLH_AtBPE_like 154 240 - -
Cec11g0454 335 Coils Coil 211 231 - -
Cec11g0454 335 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 80 274 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cec11g0454 335 MobiDBLite consensus disorder prediction 1 33 - -
Cec11g0454 335 SMART finulus 170 220 IPR011598 GO:0046983(InterPro)
Cec11g0454 335 MobiDBLite consensus disorder prediction 80 144 - -
Cec11g0454 335 Gene3D - 161 236 IPR036638 GO:0046983(InterPro)
Cec11g0454 335 MobiDBLite consensus disorder prediction 90 116 - -
Cec11g0454 335 FunFam Basic helix-loop-helix transcription factor 161 233 - -
Cec11g0454 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 234 IPR036638 GO:0046983(InterPro)
Cec11g0454 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983(InterPro)
Cec11g0454 335 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983(InterPro)
Cec11g0454 335 MobiDBLite consensus disorder prediction 117 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g0837 Cec-Chr9:7777346 Cec11g0454 Cec-Chr11:4814712 2.20E-33 dispersed
Cec10g1745 Cec-Chr10:32130978 Cec11g0454 Cec-Chr11:4814712 8.20E-33 dispersed
Cec11g0454 Cec-Chr11:4814712 Cec06g1788 Cec-Chr6:31359436 4.60E-06 dispersed
Cec11g0454 Cec-Chr11:4814712 Cec11g1714 Cec-Chr11:31384503 6.20E-11 wgd
Cec11g0454 Cec-Chr11:4814712 Cec02g0524 Cec-Chr2:4933702 2.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30506 PF00010 HLH 2.60E-06 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0454 - - - 0.0