Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0514 ATGGGTTCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTTGAAGACTATGTTAATCCTAATAGTTCAGTGTATAGGAATTGCACTTGTCTTAGTTGCTTCATTCAGAGTTTCTTAAATGCATACACATTGATTTTTCAAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACATCTATGAATTCCACAGCATCAACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGATCCCAGATATATCCGCTTGCAGCGGGATGGATTAATCTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAAGAGTCAGAACCTTTAAGAAGTGATGTGGATACCGATTCAGATTCTTTGGGCTCAGCAGGCAAATGGAATGGTTCTGCTTGTCTTGAGGAATCTAAAGAAAACCTTGGCAAATCATCTCTAAAGTTCCCTTCAACTAAATCTACCACTGGACTTGGGTATTCTTATACATCCTCCGAAGACGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTAATGGCATTCGATGAAACGACTTGA 684 41.37 MGSVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFQRGEVHSVSSSIQGATSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSDVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5456059 5460470 - CePI673135_11g005140.1 Cec11g0514 215726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0514 227 SMART ring_2 177 217 IPR001841 -
Cec11g0514 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Cec11g0514 227 MobiDBLite consensus disorder prediction 56 89 - -
Cec11g0514 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Cec11g0514 227 Pfam Ring finger domain 176 217 IPR001841 -
Cec11g0514 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 225 IPR013083 -
Cec11g0514 227 CDD RING-H2_AIRP1-like 173 221 - -
Cec11g0514 227 MobiDBLite consensus disorder prediction 103 123 - -
Cec11g0514 227 MobiDBLite consensus disorder prediction 103 129 - -
Cec11g0514 227 MobiDBLite consensus disorder prediction 56 76 - -
Cec11g0514 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 223 - GO:0004842(PANTHER)
Cec11g0514 227 SUPERFAMILY RING/U-box 171 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec11g0514 Cec-Chr11:5456059 Cec01g0246 Cec-Chr1:2460413 1.10E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0514 - - - 0.0