Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0596 ATGGCCATCTCACCATTCTCTTCTCTTTCAATCTTCTTCCTTATTTTCCTTCCTGCAATCTCAGCCGATTACGGCCACGCCACCTTCTATGGCGGCGGAGACGCTTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGTCAAGGATATGGGACGAACACGGCGGCGCTAAGTACTGCTCTGTTCAACAATGGGCTGAGCTGTGGCTCTTGTTATGAAATCACTTGCAATAGTGATCCTAAATGGTGTCTTCCTGGAAAAATCATCGTCACTGCCACTAATTTCTGTCCACCAAACTTTGCTCTGTCCAACGACAATGGCGGCTGGTGCAACCCTCCTCTGCAGCACTTCGACTTGGCGGAGCCGGCTTTTCTCCAAATCGCTCAATACCGTGCTGGAATCGTCCCTGTTTCCTTCCAAAGAGTACCATGTATGAAGAAGGGAGGAATCAGATTCACCATTAACGGACATTCATACTTCAACTTGGTTCTGATCACCAACGTGGGCGGCGCCGGCGACGTTCACTCAGTGTCGATCAAAGGTTCGAAAACAGGATGGCAAGCCATGTCCAGAAATTGGGGACAGAATTGGCAGAGCAACAATTACTTGAACGGACAGAGTCTCTCTTTCCAAGTCACCACCAGCGACGGCCGTACCGTCACCAGCTACGACGCCGTTCCGGCCAACTGGCAGTTTGGCCAGACGTTCGAGGGAGGCCAATTCTAA 735 51.16 MAISPFSSLSIFFLIFLPAISADYGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEITCNSDPKWCLPGKIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFQRVPCMKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTVTSYDAVPANWQFGQTFEGGQF 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6554473 6555413 + CePI673135_11g005960.1 Cec11g0596 215808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0596 244 Pfam Lytic transglycolase 57 142 IPR009009 -
Cec11g0596 244 SMART dpbb_1 57 142 IPR007112 -
Cec11g0596 244 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Cec11g0596 244 CDD DPBB_EXPA_N 25 147 - -
Cec11g0596 244 Gene3D - 19 148 IPR036908 -
Cec11g0596 244 PRINTS Expansin signature 91 101 IPR002963 GO:0009664(InterPro)
Cec11g0596 244 PRINTS Expansin signature 163 184 IPR002963 GO:0009664(InterPro)
Cec11g0596 244 PRINTS Expansin signature 52 66 IPR002963 GO:0009664(InterPro)
Cec11g0596 244 PRINTS Expansin signature 79 90 IPR002963 GO:0009664(InterPro)
Cec11g0596 244 PRINTS Expansin signature 198 219 IPR002963 GO:0009664(InterPro)
Cec11g0596 244 PRINTS Expansin signature 127 140 IPR002963 GO:0009664(InterPro)
Cec11g0596 244 PRINTS Expansin signature 227 243 IPR002963 GO:0009664(InterPro)
Cec11g0596 244 PRINTS Expansin signature 110 127 IPR002963 GO:0009664(InterPro)
Cec11g0596 244 PRINTS Expansin signature 151 163 IPR002963 GO:0009664(InterPro)
Cec11g0596 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 152 IPR007112 -
Cec11g0596 244 Gene3D - 151 244 IPR036749 -
Cec11g0596 244 FunFam Expansin 152 244 - -
Cec11g0596 244 PRINTS Expansin/Lol pI family signature 21 36 IPR007118 GO:0005576(InterPro)
Cec11g0596 244 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576(InterPro)
Cec11g0596 244 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Cec11g0596 244 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576(InterPro)
Cec11g0596 244 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Cec11g0596 244 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Cec11g0596 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Cec11g0596 244 PANTHER EXPANSIN-A15 12 244 IPR002963 GO:0009664(InterPro)
Cec11g0596 244 SUPERFAMILY Barwin-like endoglucanases 12 170 IPR036908 -
Cec11g0596 244 FunFam Expansin 19 148 - -
Cec11g0596 244 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2648 Cec-Chr5:37168435 Cec11g0596 Cec-Chr11:6554473 6.00E-112 dispersed
Cec08g1462 Cec-Chr8:26371616 Cec11g0596 Cec-Chr11:6554473 1.70E-93 dispersed
Cec10g0352 Cec-Chr10:4173468 Cec11g0596 Cec-Chr11:6554473 6.10E-70 dispersed
Cec11g0596 Cec-Chr11:6554473 Cec11g0996 Cec-Chr11:16789062 1.10E-105 dispersed
Cec11g0596 Cec-Chr11:6554473 Cec07g0569 Cec-Chr7:7096549 2.20E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0596 - - - 0.0