Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0606 ATGTCAAGAGAAAGCAGAGAATTGCAACAGGTCGATGAGACCGGGAAGAAAATAAAGAGGGAAATTGATCAAAGTTTTTATGATCCATTAATGGGAAGAAGACATATTTTAAGTCCAAGTACTGGGACGACATTGAATACAATAACGCCATGTGCAGCTTGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCATTTTCTCCATATTTTTCTCCACATGAACCCCAAAAATTTGCTTCGGTTCATAAGGTTTTTGGTGCAAGCAACGTGGCTAAGATGCTAATGGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCTGTGTATGGTTGCATGGGAGTCATTTCTGCTCTCCAACACCAACTTCATACTTTACAATCTGACCTCAATTCCATCAGAACTCAGATTTTCAACTTCAAATTTACACAACATAATAATTCACACATTCCTAATTTCATTTCCGCCGCCGCTGCAACCCCGCCTGCAGCCCCGCCGACTCCGCCACATTCTCAGCCGCCTCCCCTCTCTCTTCCGCCCCCTCTTCCTTCCTCCTCTTCCATCTTTTCATCTCCTATTATCACTACTACTACTGCTGCCCCTGAATTAATTAACCCCATCTCAACAACTCAACATATTTCCTACTTTGGTTAA 693 42.86 MSRESRELQQVDETGKKIKREIDQSFYDPLMGRRHILSPSTGTTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNFKFTQHNNSHIPNFISAAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTTTAAPELINPISTTQHISYFG 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6664733 6667199 + CePI673135_11g006060.1 Cec11g0606 215818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0606 230 ProSiteProfiles LOB domain profile. 49 150 IPR004883 -
Cec11g0606 230 Pfam Lateral organ boundaries (LOB) domain 50 146 IPR004883 -
Cec11g0606 230 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 48 175 - -
Cec11g0606 230 MobiDBLite consensus disorder prediction 171 195 - -
Cec11g0606 230 MobiDBLite consensus disorder prediction 174 195 - -
Cec11g0606 230 Coils Coil 129 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g2144 Cec-Chr9:38382852 Cec11g0606 Cec-Chr11:6664733 2.40E-27 dispersed
Cec10g1403 Cec-Chr10:28374804 Cec11g0606 Cec-Chr11:6664733 2.80E-32 dispersed
Cec11g0606 Cec-Chr11:6664733 Cec11g1157 Cec-Chr11:23600517 7.20E-35 dispersed
Cec11g0606 Cec-Chr11:6664733 Cec07g0553 Cec-Chr7:6641470 5.30E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30513 PF03195 LOB 1.90E-40 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0606 - - - 0.0