Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0670 ATGACGACGATCCAAAACTCCCACGTTGTCGCAATGGATGTAGAACGACAACAAGAACAAGAACGGCCTTGCCCACTTTCCGCCGCTCCCACTGACTCCTCACCGGCCTCCGATGATGTGCGGCGGTGCTCGGCCCAGTCCAGGGCTGACATTCTGGAGGAGGCGGTGGCGGAGAAAAGAAGGAGATCCTCTGTCTCGGAGTGCTCTGTCGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAGGGACTGCCGGATTTGTCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCTCATAAGCAGTGTGCCGAGGCTTGGTTCAAGATAAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTACGAAGCCGATTCGACAGAGCAGCGAAACGAGTCAAACGAAGCAACAACAGCAACGGCTACAGCTGCTGTCGTGATGCCACTGCACTCTACAGAGGTTCGGAACTTCTGGCAGGGCCACAGTTTTATATTATATGATTGGGCTTTGTATTGTTTTAAAGAAAACAGACAGGTTGGTGTTCGAAAAGATGCTGAAACGGCTCAGCCTAGCTGGATTGGCCATCTTGTCTCTTGTCGTTTCATTGTGGATAATTCTCTGTTGAGATTCCGACATGTAGTTCCTTCTATACCAACAAAATCGGATTTGGGTCTCAAAATAATTAATGTTAAAAACTGA 795 47.92 MTTIQNSHVVAMDVERQQEQERPCPLSAAPTDSSPASDDVRRCSAQSRADILEEAVAEKRRRSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKQCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNESNEATTATATAAVVMPLHSTEVRNFWQGHSFILYDWALYCFKENRQVGVRKDAETAQPSWIGHLVSCRFIVDNSLLRFRHVVPSIPTKSDLGLKIINVKN 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7427420 7430468 + CePI673135_11g006700.1 Cec11g0670 215882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0670 264 Pfam RING-variant domain 92 143 IPR011016 GO:0008270(InterPro)
Cec11g0670 264 SUPERFAMILY RING/U-box 89 146 - -
Cec11g0670 264 ProSiteProfiles Zinc finger RING-CH-type profile. 84 150 IPR011016 GO:0008270(InterPro)
Cec11g0670 264 SMART ringv_2 91 144 IPR011016 GO:0008270(InterPro)
Cec11g0670 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 153 IPR013083 -
Cec11g0670 264 PANTHER ZINC FINGER, RING-CH-TYPE 17 197 - -
Cec11g0670 264 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0099 Cec-Chr3:1048323 Cec11g0670 Cec-Chr11:7427420 8.50E-27 dispersed
Cec04g0309 Cec-Chr4:12090274 Cec11g0670 Cec-Chr11:7427420 6.80E-09 transposed
Cec10g2171 Cec-Chr10:36177429 Cec11g0670 Cec-Chr11:7427420 4.90E-45 wgd
Cec11g0670 Cec-Chr11:7427420 Cec04g0877 Cec-Chr4:28513308 8.00E-30 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0670 - - - 0.0