Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0819 ATGGCAACAACAATGACGGCGTCGAAGGAGGAAGGTGGATGGGAGAGGCTGAAGATCCATCTTCGTTTGAGCGTTCCTTCATTCCTTCACCATGGATCTTTGTTCAACAGTTCGAGCTCTAACATGGATCTCTATTCCAGCTTTTTTGTGGATCTTCATTCCAACTACATTGACCGTCGAGCTCTACTAGCCTTCTTCAATTACTTCGTTAAGTGTTTGTCTCTAGTTCCAGAGTTGAGCTCCATAAAGCGTTGCAATTGTTCTAGCTCCGTTCTAGTTTTATCAACCTTCGTGCTCACGTTGTTCGAGCCAAGTTTGATTTTAGATCTAAGCATTGTCAAAGCAAATCTTCGTTTGTGTTCACGTTTTTCATTTCGTATTAGATATGTTCACGGATCTATTTACGAACTTCGTTCCAGCCCTATCGAAGCAGATCTAAGAACTTTGTTCCGATGCTCGCGAAAGGCTAGACCTCGCGAAAGCTTGCACTTCTTCCGCCGTCGAAAAGTAAGTTGTTGTTTGCTTCTGCCAGAATCGTATCATCGGAGACGGAGGCGGCGACTGTCCTCTCTCGCTGCCAGTTTTATCACTGTCCACCTTGCGACCGCTACCGCGACTGAAGGATTAAGGAACAATATGTTCAAGAAGGCGGCAGAAGCGAAGTTACACCAGAGATTATCTGGTGCAGACAGGAAGAAGCTGAAGAGGACTGTTAAAGAAAGGTTCCCCGGAGCTTCCGATGCCGATATTGATGTCTTGCTTCCTCCCAAGGTTGAGTTTTCTGTTGCCAAGTTCCAAAATCGCGTCCACATATATAGTCTAGAAGGAGGCTTTCCTATGTTTTTCGACGTTGATGGGAGAGGAACTGAAATATTTCCCACAGTTTTTGCACTCTGGATGGTACCAGAGTTGTTGCCTGCGTTTGTTTTGAAGGGGGGTGAAGTCTCTCGCTATGTGATAGGAGGAGCAGACTTGATGTTCCCTGGTATTCACATTCCTGCTGAAGGTCTTCCTTCATTTTTATCTGGGGAACCATGGGCTGTGAAAGTCCCTGGCAATGCATCTCCTATTGCTGTTGGTGTTACCACCATGAGTAGCACTGAAGCATTAAAAGCGGGTTTACGTGGAAAGGCTCTGAGAATTCTACACTACTACAGGGATTCCCTTTGGGGATCGGTAGAGGGTCATTATGTGCCGAATGCAGGTTTCTTGGAAGATGTTGTATATGGAGATCCTGTTTTGGCATCATCTTCACAAACCGATGACTCTTGTGAAGGTACTGAAACTGCTGCTGATGCTTCAAATTATGGACAGAATGACAGCAGCAATAAAGAAGTTGGGGGATCTGTTGATGAAACTACAAGGGATGTTCTTGATGAGCCTGGGGTTGTTCTAACAGCACAGACAGATTCAACTACTGATGATATCGTTTCTGGTGTGAATGATTTGAAGGTTGTAAATGATATTTCCATTGAGGAACCAAATGTGCAACATACTCTATCAGCTGATGATGTGGATAAGCTTCTGGATAAATGTCTTCTTCAAGCCCTGCATACAACCGTGAAAGACAAAGACTTTCCACTTCCTGGAAGCACTCTATGGTCAAATCATGTATTGCCTTGTCGGCCTCCTGGCATGATGCTAGACATCAAGAAATCATCTTACAAGAAATTGTCAAAGTGGTTGCAAGCTAAATCCTCTACTGGACTGATTATAGTGAAAGAAGACAAGCATAAAAAAGAGACGGTTTTGTACTCTGTTAACCGTAAGCATCCAGACTACACTTCCTTTAAACCATCAAAGCAACAGGTAGAGAAAATTGATCAGAGCGACAATCATGGTTCAAAAGAAAGTTTATCCAATAAAATGCTTGAAGTAGCAGAGATATACAAGCCAAGTGTGCATGTCAATCCTATTTTTTTTGCTGTGGGGGCGGACACTAGCAAACTTTACACTGCAGCAGAGGCTACTGATATTGTCTTCCAATACATTGAGAAAGAAAAATTGGAGAAACCAACAGAAAAGTCCAGAGTGGTCTTGGACGCAATATTGTGTGATGCACTGTTCAAGGGGGCCATTAAGAAAGGAACAACATATCCAACAGAAATTCATAAAAAAGATATAGGTTCAACATTTATCAGCCGGATGCAACCTCATCATATTGTAACAAGAGGAAGTGAGTCTGTTGTTCGCAAAGGTGCATTAAAGACTATTCAAATAATGACAGAGCGACGTCAAGGAAATAAGAAAGTTACAAGACTTTCTGGGTTGGAAACGTTCTTGTTGGATGCTGAAGCATTGGCATCAGAGCTTCAGAAAAAGTGTGCTTGCAGTACGACGGTGGCTGAGTTGCCAGGTAAAAAAGGTACATTGAAGTACTTGATAAAACAAGGAAATGAGAGGCTAGAGCTGCTATATATTCACAGGAAACTTACCAACCCCCGCCTGTATCATGCAAAAAAGGAAAAGCCTGAATCAAAAAATATGGTAGAAGTCTGGAAAATTGGCTCTCGTTTCACCGACACTGAATGTTTATCAACTTAA 2544 42.77 MATTMTASKEEGGWERLKIHLRLSVPSFLHHGSLFNSSSSNMDLYSSFFVDLHSNYIDRRALLAFFNYFVKCLSLVPELSSIKRCNCSSSVLVLSTFVLTLFEPSLILDLSIVKANLRLCSRFSFRIRYVHGSIYELRSSPIEADLRTLFRCSRKARPRESLHFFRRRKVSCCLLLPESYHRRRRRRLSSLAASFITVHLATATATEGLRNNMFKKAAEAKLHQRLSGADRKKLKRTVKERFPGASDADIDVLLPPKVEFSVAKFQNRVHIYSLEGGFPMFFDVDGRGTEIFPTVFALWMVPELLPAFVLKGGEVSRYVIGGADLMFPGIHIPAEGLPSFLSGEPWAVKVPGNASPIAVGVTTMSSTEALKAGLRGKALRILHYYRDSLWGSVEGHYVPNAGFLEDVVYGDPVLASSSQTDDSCEGTETAADASNYGQNDSSNKEVGGSVDETTRDVLDEPGVVLTAQTDSTTDDIVSGVNDLKVVNDISIEEPNVQHTLSADDVDKLLDKCLLQALHTTVKDKDFPLPGSTLWSNHVLPCRPPGMMLDIKKSSYKKLSKWLQAKSSTGLIIVKEDKHKKETVLYSVNRKHPDYTSFKPSKQQVEKIDQSDNHGSKESLSNKMLEVAEIYKPSVHVNPIFFAVGADTSKLYTAAEATDIVFQYIEKEKLEKPTEKSRVVLDAILCDALFKGAIKKGTTYPTEIHKKDIGSTFISRMQPHHIVTRGSESVVRKGALKTIQIMTERRQGNKKVTRLSGLETFLLDAEALASELQKKCACSTTVAELPGKKGTLKYLIKQGNERLELLYIHRKLTNPRLYHAKKEKPESKNMVEVWKIGSRFTDTECLST 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9773965 9789811 - CePI673135_11g008190.1 Cec11g0819 216031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0819 847 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2D 213 801 IPR039757 GO:0001731(InterPro)|GO:0001731(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)
Cec11g0819 847 FunFam Eukaryotic translation initiation factor 2D isoform A 213 397 - -
Cec11g0819 847 SUPERFAMILY SWIB/MDM2 domain 621 720 IPR036885 -
Cec11g0819 847 Gene3D - 211 397 - -
Cec11g0819 847 SUPERFAMILY PUA domain-like 315 391 IPR015947 -
Cec11g0819 847 Gene3D - 734 809 - -
Cec11g0819 847 ProSiteProfiles PUA domain profile. 305 386 - -
Cec11g0819 847 SUPERFAMILY eIF1-like 703 790 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Cec11g0819 847 MobiDBLite consensus disorder prediction 415 460 - -
Cec11g0819 847 MobiDBLite consensus disorder prediction 415 448 - -
Cec11g0819 847 CDD eIF2D_C 738 799 IPR039759 -
Cec11g0819 847 Pfam Translation initiation factor SUI1 736 801 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cec11g0819 847 FunFam eukaryotic translation initiation factor 2D 735 810 - -
Cec11g0819 847 CDD PUA_eIF2d-like 304 386 IPR048248 -
Cec11g0819 847 ProSiteProfiles Translation initiation factor SUI1 family profile. 738 812 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cec11g0819 847 Pfam Pre-PUA-like domain 214 302 IPR041366 -
Cec11g0819 847 MobiDBLite consensus disorder prediction 594 618 - -
Cec11g0819 847 CDD eIF2D_N 221 293 IPR048247 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0819 K15027 - - csv:101219792 1065.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0972 Cec-Chr10:21993032 Cec11g0819 Cec-Chr11:9773965 6.30E-56 dispersed
Cec11g0819 Cec-Chr11:9773965 Cec11g1077 Cec-Chr11:20796916 1.80E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1717 . Blo12g00811 . . . . . . . . . . . . . . . Bhi04g02549 Tan11g0045 . . Hepe02g3467 . Lcy10g2359 . . . . . . . Cone4ag1153 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00797 Cam11g0833 Cec11g0819 Cco11g0821 Clacu11g1027 Cmu11g0888 Cre11g1275 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008392 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34