Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0828 ATGAAATACAAAGATGGAGGGATGCTCTTACGGAAATTGCAAATTTGTCTGGTTTGGATTTCGCTAACTGACCGTTTGACATTGAATGATGTTGATGGTGTGGTTGGAATTGAAGATCGTGTGGAGCGTATTGAGTCTTGTCTACGTGATTCCAATGACGATGTTCGCATTTTAGACATTTGGGGAATGGGCGGCATTGGTAAAACTACAGTTGCCACAGCTCTGTTTCATAAAATAAAATATGAATTTGATGGTTATTGCTTTCTTGAGAACGTTAGGGAAAGTTCTGGTAGAAATGGACAGGGACTACCAAATTTACGAAATATGCTTCTATCTCAAGTTATGCAGGAACAACAACACCTTTCAATGCATATTTCACGAGCTTTCCTTAAAAATAGGTTGAGTGGAAATAAGGTGCTCATTGTTCTTTATGATATTGATGACATAAAACAATTAGAGAATTTAGTTGGAGGACGCAATTGGTTTGGAGTAGGAAGTAGAATTGTCATAACAACTACAAACAGACAACTTCTTACTGATCAGGTAGATGAAGTTTATGACTATGCAAAGGAGCAGTTATCTGATGAGGAAGGTTTGCTTCTCTTTAACCGCTATGCGTTTAAAACAAGCCAACAGCCAGAGGATTACCTTGAGCTTTCTAGAAAGGCTATGCATTATGCATCCGGCATTCCCTTAGCTCTCAAGCTCTTAGGTTCTTATCTACGTAAAAAGGACGAAAGAACGTGGAAAAGTGCATTGGCTAGACTAGAAAGATTTTCCGACGATGAAATATATAGGAAAGTACTAGAACTAAGCTTTGAAGGACTTAATTCGAACGAGAAAGACATTCTACTTGATGTAGCATGTTTCTTTAAGGGAGAGGATGTTGAACTTGCCAGTTTAGTATGGGAAGCTTGTGGCTTTTTGTCGCACGATGCTATTTCTGTACTTAGTGACAAGTGTCTCATATCGATGCAAAATAATAACTCTCGACTCTGGATGCATGATTTGATCCAAGAGATGTGGAAAGCAATTGTTCGAAAAGAGAGCGTTGAACCAGGTGAGCGCACTCGGTTGTGGGAACCTGAAGATATCTTTCACATTTTTAACAAAAATACTCGGACTTCAAAAATTCAATGCATAATCTTGGACTTGTCAGAAACTAAAGAGGTATTAGAATTAGGTGAGGAAGCTTTTGTGAAAATGGAGAAATTGATACTGTTGAAGTTCTTCTCCAGACCACTAGATGACATCAGCACCAACAGTAGGCTTCCTCGTGATTTAACAATGCTTCCAAACAGCTTGACATATCTTTTTTGGGATCACTCTCCGAACAAGTTTCTTGCTTCAAAATTTCATCCGCTGAATCTTGTTGGGTTGTTTACGCCAGAGTTGCATCAGACAACTGTGGAAAGGACACGGTAG 1425 39.02 MKYKDGGMLLRKLQICLVWISLTDRLTLNDVDGVVGIEDRVERIESCLRDSNDDVRILDIWGMGGIGKTTVATALFHKIKYEFDGYCFLENVRESSGRNGQGLPNLRNMLLSQVMQEQQHLSMHISRAFLKNRLSGNKVLIVLYDIDDIKQLENLVGGRNWFGVGSRIVITTTNRQLLTDQVDEVYDYAKEQLSDEEGLLLFNRYAFKTSQQPEDYLELSRKAMHYASGIPLALKLLGSYLRKKDERTWKSALARLERFSDDEIYRKVLELSFEGLNSNEKDILLDVACFFKGEDVELASLVWEACGFLSHDAISVLSDKCLISMQNNNSRLWMHDLIQEMWKAIVRKESVEPGERTRLWEPEDIFHIFNKNTRTSKIQCIILDLSETKEVLELGEEAFVKMEKLILLKFFSRPLDDISTNSRLPRDLTMLPNSLTYLFWDHSPNKFLASKFHPLNLVGLFTPELHQTTVERTR 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10083868 10089430 - CePI673135_11g008280.1 Cec11g0828 216040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0828 474 Gene3D - 24 185 IPR027417 -
Cec11g0828 474 PRINTS Disease resistance protein signature 57 72 - -
Cec11g0828 474 PRINTS Disease resistance protein signature 227 241 - -
Cec11g0828 474 PRINTS Disease resistance protein signature 133 147 - -
Cec11g0828 474 Gene3D - 192 277 IPR042197 -
Cec11g0828 474 SUPERFAMILY Winged helix DNA-binding domain 267 368 IPR036390 -
Cec11g0828 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 286 IPR027417 -
Cec11g0828 474 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 30 462 IPR044974 GO:0006952(InterPro)
Cec11g0828 474 Pfam NB-ARC domain 38 260 IPR002182 GO:0043531(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0828 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec11g0828 Cec-Chr11:10083868 Cec11g1118 Cec-Chr11:22560932 1.50E-63 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1683 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00805 Cam11g0842 Cec11g0828 . Clacu11g1015 Cmu11g0878 Cre11g1288 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013419 0 0 0 0 0 1 0 1 2 0 1 1 0 0 1 0 1 0 0 1 0 1 0 4 2 1 1 0 1 5 24