Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0935 ATGGCGGCAATAGGCAGCAGATATTGGCAAATTCCAAACCTTGTCCGAAATGCAAACGTCCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGATATACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCGGATCTCCATCAAATGCAAACCGTGCATCTCGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCTAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCTGATGGTCCTTCAAAAGATTTCAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCAGATGTGGATTCCCATGGTACCTGCAGCAAAACAGTAAGCTCAAAGAGTACTAGTGGCTGTAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGGTTCGAGTCGAAACATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCGAATGTTAAATCAGCTACCTTCTGCCAGATGTGCCAGCAACGGCGATAA 891 44.22 MAAIGSRYWQIPNLVRNANVLLRKIKGACILLAHHLVNLSSAGFALVHGLIMERGQEDFMHYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTVSSKSTSGCRSKGGKGKMSAFRASGSSRNIDDTDHWSCEHCTFANVKSATFCQMCQQRR 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14790344 14805796 + CePI673135_11g009350.1 Cec11g0935 216147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0935 296 Gene3D - 51 228 - -
Cec11g0935 296 ProSitePatterns Zinc finger RanBP2-type signature. 273 292 IPR001876 -
Cec11g0935 296 MobiDBLite consensus disorder prediction 240 265 - -
Cec11g0935 296 Pfam Ariadne domain 63 227 IPR045840 -
Cec11g0935 296 ProSiteProfiles Zinc finger RanBP2 type profile. 269 296 IPR001876 -
Cec11g0935 296 Gene3D - 262 296 - -
Cec11g0935 296 SMART zf_4 271 295 IPR001876 -
Cec11g0935 296 SUPERFAMILY Ran binding protein zinc finger-like 269 296 IPR036443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0935 K11968 - - csv:101218052 468.003
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0471 Cec-Chr8:13803545 Cec11g0935 Cec-Chr11:14790344 2.20E-99 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec09g1901 . 164 584 ARIADNE family AT4G34370 72.6 7.3e-182 633.6
Cec09g1901 . 58 542 ARIADNE family AT2G16090 77.4 6.1e-225 776.9
Cec09g1901 . 38 543 ARIADNE family AT3G27710 62.0 4.4e-184 641.3
Cec09g1901 . 44 522 ARIADNE family AT3G27720 54.5 5.3e-144 508.1
Cec08g0471 . 61 538 ARIADNE family AT1G05890 73.2 3.0e-218 755.0
Cec11g0935 . 62 244 ARIADNE family AT1G05890 72.1 4.2e-71 266.2
Cec08g0471 . 57 589 ARIADNE family AT1G65430 72.4 8.3e-242 833.2
Cec11g0935 . 62 296 ARIADNE family AT1G65430 73.2 7.1e-92 335.1
Cec08g0471 . 58 454 ARIADNE family AT2G31780 58.4 6.3e-144 507.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72