Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g0996 TTTGAAAGATTGCGCTTCAAAACTTCTCTTAAGTCGTTGCCGGAGATCTCAACGGAGACTTTTTTTAGAAGAGAAGGAGGAGAGGAAGATGAAGATGGAGATGGAGAGGGAAGGAAAATGGAGTTTCATTTCCTCTTTTTAATGCCCTTTCTCTCACTCCTCTCTTCCGCCGCCGCCTGGATTAATGCTCATGCCACCTTCTACGGCGGCAGCGATGCTTCCGGGACAATGGGTGGAGCTTGTGGGTATGGGAATCTTTACAGTGAAGGCTACGGAACCAACACTGCAGCAGTTAGCACTGCTCTTTTCAACAATGGGTTGAGCTGTGGGTCTTGTTATGAAATCAAGTGCGTTAATGACCCGAAATGGTGCCTCCATGGCTCTATTTTGGTCACTGCAACCAATTTCTGTCCGCCCAATAATGCACTTCCTAATAACGCCGGCGGCTGGTGCAACCCTCCCCTCCACCACTTTGACCTCTCCCAGTCCGTCTTCCTCCGCATTGCTCAATACCACGCCGGCATCGTCCCAGTCGTCTATCGCAGAGCTCCATGTAAGAGGAAGGGAGGAGTAAGGTTCACAATCAATGGGCATTCCTACTTCAACTTAGTGCTAATAACCAACGTCGGGGGCGCCGGGGATGTGCATGCGGTGTCCGTGAAAGGGTCTAGAACTGGTTGGCAATCAATGTCCAGAAATTGGGGACAGAACTGGCAAAGCCACACCTATTTGGATGGTCAAACCCTCTCTTTCAAGCTCACTACTAGCGACGGCCGTACGCTTATTTCCAACAATGTCGTTCCTGCCGGCTGGTCCTTTGGCCAGACCTTCACCGGCGCCCAATTCCGGTACACAAAGAATACGAGTCGAAGATTTGAGAACATAAACCACAATGAGGATGGGCTAGATAGGGATCAACACCTGAGAAGAGCAAGGGAGAAAGCATCTCCACAACCACAGCAGCAAGACAACCGAGCTGACCATGCCAATATGAATGCAAGAGCTTGA 1008 50.2 FERLRFKTSLKSLPEISTETFFRREGGEEDEDGDGEGRKMEFHFLFLMPFLSLLSSAAAWINAHATFYGGSDASGTMGGACGYGNLYSEGYGTNTAAVSTALFNNGLSCGSCYEIKCVNDPKWCLHGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQSVFLRIAQYHAGIVPVVYRRAPCKRKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSVKGSRTGWQSMSRNWGQNWQSHTYLDGQTLSFKLTTSDGRTLISNNVVPAGWSFGQTFTGAQFRYTKNTSRRFENINHNEDGLDRDQHLRRAREKASPQPQQQDNRADHANMNARA 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16789062 16795488 - CePI673135_11g009960.1 Cec11g0996 216208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g0996 335 Gene3D - 190 282 IPR036749 -
Cec11g0996 335 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 200 279 IPR007117 -
Cec11g0996 335 SMART dpbb_1 95 180 IPR007112 -
Cec11g0996 335 SUPERFAMILY PHL pollen allergen 187 279 IPR036749 -
Cec11g0996 335 SUPERFAMILY Barwin-like endoglucanases 50 208 IPR036908 -
Cec11g0996 335 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576(InterPro)
Cec11g0996 335 PRINTS Expansin/Lol pI family signature 59 74 IPR007118 GO:0005576(InterPro)
Cec11g0996 335 PRINTS Expansin/Lol pI family signature 265 279 IPR007118 GO:0005576(InterPro)
Cec11g0996 335 PRINTS Expansin/Lol pI family signature 99 117 IPR007118 GO:0005576(InterPro)
Cec11g0996 335 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Cec11g0996 335 PRINTS Expansin/Lol pI family signature 173 189 IPR007118 GO:0005576(InterPro)
Cec11g0996 335 FunFam Expansin 190 282 - -
Cec11g0996 335 FunFam Expansin 52 186 - -
Cec11g0996 335 PRINTS Expansin signature 265 281 IPR002963 GO:0009664(InterPro)
Cec11g0996 335 PRINTS Expansin signature 90 104 IPR002963 GO:0009664(InterPro)
Cec11g0996 335 PRINTS Expansin signature 129 139 IPR002963 GO:0009664(InterPro)
Cec11g0996 335 PRINTS Expansin signature 236 257 IPR002963 GO:0009664(InterPro)
Cec11g0996 335 PRINTS Expansin signature 189 201 IPR002963 GO:0009664(InterPro)
Cec11g0996 335 PRINTS Expansin signature 148 165 IPR002963 GO:0009664(InterPro)
Cec11g0996 335 PRINTS Expansin signature 165 178 IPR002963 GO:0009664(InterPro)
Cec11g0996 335 PRINTS Expansin signature 117 128 IPR002963 GO:0009664(InterPro)
Cec11g0996 335 PRINTS Expansin signature 201 222 IPR002963 GO:0009664(InterPro)
Cec11g0996 335 MobiDBLite consensus disorder prediction 295 335 - -
Cec11g0996 335 Pfam Expansin C-terminal domain 191 268 IPR007117 -
Cec11g0996 335 CDD DPBB_EXPA_N 60 185 - -
Cec11g0996 335 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 78 190 IPR007112 -
Cec11g0996 335 PANTHER EXPANSIN-A15 46 282 IPR002963 GO:0009664(InterPro)
Cec11g0996 335 MobiDBLite consensus disorder prediction 295 316 - -
Cec11g0996 335 Gene3D - 52 186 IPR036908 -
Cec11g0996 335 Pfam Lytic transglycolase 95 180 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1758 Cec-Chr1:32142637 Cec11g0996 Cec-Chr11:16789062 8.50E-87 dispersed
Cec06g1810 Cec-Chr6:31564656 Cec11g0996 Cec-Chr11:16789062 1.50E-110 dispersed
Cec07g0569 Cec-Chr7:7096549 Cec11g0996 Cec-Chr11:16789062 3.50E-107 dispersed
Cec09g1926 Cec-Chr9:36138553 Cec11g0996 Cec-Chr11:16789062 4.80E-106 dispersed
Cec09g2072 Cec-Chr9:37762880 Cec11g0996 Cec-Chr11:16789062 2.40E-98 dispersed
Cec10g0663 Cec-Chr10:9253246 Cec11g0996 Cec-Chr11:16789062 7.40E-67 dispersed
Cec11g0596 Cec-Chr11:6554473 Cec11g0996 Cec-Chr11:16789062 1.10E-105 dispersed
Cec11g0996 Cec-Chr11:16789062 Cec05g2648 Cec-Chr5:37168435 6.20E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g0996 - - - 0.0