Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1017 CATACCTTGAAAGATGTGTTGGTACTGGATACTGTTTTTCTTACATATGACATAGTTACTCTAATTTCAAGTGATATGGGGACAGAGCTTATGAGCGTCTGCGTTGAAGAAGATAGTGATGACTTTCCGTCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTTCTGTAGGGAAGGTGCACAATCATGAAAAACAAGACAGTTGTGTCCCTGTTAGTTTGCCAACTGTCTCTGAATCACAACCAGTCAAAGTGGGAAGTGAGGTTGAAGGTGGCAATGTTGCAAAAGTTACAAGGTCCCTACGGCGTAAACCATGTGTAAACTATCGACAATATGATTACTGCTCTGATGATGAGATTGATAGTACTAAGTGTCTAGATCAGAATTTTTCTTCAAGGCCTTCTCTTTCAAAGGGAGTCATCCGTGGATGTCCACAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCGAACCTTGAGGATGCACCTGTGTTTTACCCAACCGAAGAGGAATTTGGAGATACTTTGACATATATAGCAAGCATACGAACAAAAGCAGAACCATATGGGATTTGTCGTATTGTACCGCCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGGGGTCTAAATTTGCAACTCGTGTCCAAAGAATTGATAAGCTTCAAAATCGAGATTCAATAAGAAAGAACTCTAGGGTTTGCAGTCAGATGAGAAGGAAAAGGAGGAGGAGTAGTCGAAAGGGGGTTGATGTTACCACCTTAAATGGCAAAATTGGAGATGCTGGCCCTGTTGAGGCGGAAAGATTTGGATTTGATCCTGGCCCAGATTTTACTTTAGCATTATTTCAAAAATATGCAGATGACTTTAAGTCTCAGTATTTTAGTAAACCACTCAACGATACTACAAAGGGATGTAATCCATCTATGCTGCAAGAGAACAAACATGAACCATCTTTAGAGGCTATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGCTTTCCAAAGATTTGCTGTCAAGAGGGCTCTACATTGGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGTAGCAATATATCTGGAGTCTTGGTGCCATGGCTTTATATTGGGATGTGCTTTTCGTCTTTTTGCTGGCATGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGTGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCCGGAAAGTTAGAAGAGGCTATGAGAAAACATTTGCCTAACCTCTTTCAAGAACAACCTGATTTACTCCATAAACTGGTTACACAACTTTCTCCGTCCATATTGAAAATGGAGGGTGTACCTGTATATCGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAAGGACGAAGAACTACTATTTCCCATGATAAGCTATTGCTTGGTGCTGCTCGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAGAATACTTTGGAAAATTTAAGATGGAATAATGTTTGTGGAAAAGATGGAATATTAGCAAGAGCATTCAAGACTCGTGTTGAGATGGAGTGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCCCAGGCAATGAAGATGGAGAGCAACTTCGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTGTCTGCAGTCGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCCAAGCAGTTGTGCTCTTGTGCTTGGGAAGAGAGAATTTTTCTCTTTCGCTATGACATCAGTGAATTGAACATACTTCTTGAAGCATTGGAGGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTCGGTCTGGCACTCAGTACATCTAGGGAGTTGAGTTCTCAATCATCAACCAAGTCCCTTGGGAATCCCAAATGGAAAGAATTCTTGAGGCAATCTTCATTATTACCAACTCTAACCGCTTTTGACAGCCCTTCTCATCATGCCAAAAAGTTATCTGAAGTTACTGCTTCCTTTTCAGAAGTTAAGAAGGTAATTTCCACAGTTGACGGATCTGGGAAGGAAATTGAGCAGCAAAATCATCAAATTGAGGTGAAAAAAGAAAACCATGACCTTGTGGCAACCAATTCAAGACATGCAGATTCACAGTCCTGTAAGGAAGATACAAATGCTCTGAATTTAGTAGAAGTGAGAAATACAACGGATAAAATATGTCCTGAAAATGTCATACTATTAAGTGATGATGAAGGTGATGAGCATAAGAAGACGATTTCAAATGGTTTAGCTGAAAGTTCATCAGTAAAGCAGCTGGGAAATTCAGACCAGTTCACTGAGATTGATTCCAAGGCCAGCCAGTGCAACTACGATGAAAATGCCATTCTGCACACTCCTGCGACTGATGCAACAGCCATGGGAGAAAAGGAGGTCAACTTGTTGACTGAAAAAAGATTGAATAGTTGCCAATCGAGCATTGTGCCTTTAGATAGTAAACAGTTTCAAAACATTAACTTATCAGTTAGAGATGCAGCTAATGCTATTCAGAACACCTCAGATGCAGGATTAAATCATAGTAATAGAGTATTTCCAGCGTCAACAGACACTGATTCTCAAAAACCACAGACATGTGGCTCTGGAAAATTGAATGAGGGTAAGCATGGAAATGTGGGAACAAGTGCTACCTCTTGTGTGTTAGACCATAGTAGAACTACTGCAAATTTATCTTGCAATCAAGCTAATATGGATAGATTCATGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGGAGGATTAACTGCAATGTTGAGCCTTTAGAATATGGAATCGTGCTCTCAGGAAAGTCTTGGTCAAACTGTCAGGCCATTTTCCCAAAAGGATTTAAGAGCAGGGTCAAGTTTATAAGTGTTTTAGATCCGTCAACTTTGTGTTACTATGTTTCTGAAATTCTCGATGCTGGACGGGATGGGCCTCTTTTCATGGTTGTTTTGGAGCATTGTCCAAGTGAGGTATTCGTTCATGTTTCTGCTACCAGATGTTGGGAGTTGGTTAGAGAACGAGTCAATCAGGAAATTGCAAAGCAACATAAGTTGGGTAGAACAAACCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGGTTAGAAATGTTCGGATTTACTTCACCGGCAATTGTGCAGGCCATCGAGGCAATGGATCGAAATCGAGTATGTGGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCAAGTACATAGTCCACAACTGTCTCAATCAACAGAAATTAGTCGTAACATGCAAACATCCGAAAGGACCCACGGGGTTGATTCTAGGCCAGCTGGAGTTGATATAGTACTTAGGAGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAACTCACTCTATACCCTTTTAAATGATAATAGGCCAACAGTTGATCAAGGTGTGTTAGCTCGACTTCTTAACGAAGAGATTCAAAGTCATCGAAGATGA 3777 41.81 HTLKDVLVLDTVFLTYDIVTLISSDMGTELMSVCVEEDSDDFPSVPPGFESYISFSVGKVHNHEKQDSCVPVSLPTVSESQPVKVGSEVEGGNVAKVTRSLRRKPCVNYRQYDYCSDDEIDSTKCLDQNFSSRPSLSKGVIRGCPQCNNCQKVVARWRPEESCRPNLEDAPVFYPTEEEFGDTLTYIASIRTKAEPYGICRIVPPSSWKPPCPLKQKHIWEGSKFATRVQRIDKLQNRDSIRKNSRVCSQMRRKRRRSSRKGVDVTTLNGKIGDAGPVEAERFGFDPGPDFTLALFQKYADDFKSQYFSKPLNDTTKGCNPSMLQENKHEPSLEAIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKICCQEGSTLDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPNLFQEQPDLLHKLVTQLSPSILKMEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLENLRWNNVCGKDGILARAFKTRVEMECARRNLPCSSSQAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERIFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSSQSSTKSLGNPKWKEFLRQSSLLPTLTAFDSPSHHAKKLSEVTASFSEVKKVISTVDGSGKEIEQQNHQIEVKKENHDLVATNSRHADSQSCKEDTNALNLVEVRNTTDKICPENVILLSDDEGDEHKKTISNGLAESSSVKQLGNSDQFTEIDSKASQCNYDENAILHTPATDATAMGEKEVNLLTEKRLNSCQSSIVPLDSKQFQNINLSVRDAANAIQNTSDAGLNHSNRVFPASTDTDSQKPQTCGSGKLNEGKHGNVGTSATSCVLDHSRTTANLSCNQANMDRFMRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNCQAIFPKGFKSRVKFISVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCPSEVFVHVSATRCWELVRERVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCGEYWDSRPYSRPQVHSPQLSQSTEISRNMQTSERTHGVDSRPAGVDIVLRRLLKKANLEELNSLYTLLNDNRPTVDQGVLARLLNEEIQSHRR 1258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18241553 18253284 - CePI673135_11g010170.1 Cec11g1017 216229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1017 1258 SMART fyrn_3 1036 1080 IPR003888 GO:0005634(InterPro)
Cec11g1017 1258 Pfam F/Y-rich N-terminus 1037 1079 IPR003888 GO:0005634(InterPro)
Cec11g1017 1258 Gene3D - 1030 1166 - -
Cec11g1017 1258 ProSiteProfiles JmjC domain profile. 383 549 IPR003347 -
Cec11g1017 1258 ProSiteProfiles FYR domain FYRN motif profile. 1022 1080 IPR003888 GO:0005634(InterPro)
Cec11g1017 1258 MobiDBLite consensus disorder prediction 1176 1202 - -
Cec11g1017 1258 Pfam C5HC2 zinc finger 639 690 IPR004198 -
Cec11g1017 1258 ProSiteProfiles JmjN domain profile. 170 211 IPR003349 -
Cec11g1017 1258 Pfam jmjN domain 171 204 IPR003349 -
Cec11g1017 1258 SMART cupin_9 383 549 IPR003347 -
Cec11g1017 1258 MobiDBLite consensus disorder prediction 948 978 - -
Cec11g1017 1258 SUPERFAMILY Clavaminate synthase-like 384 576 - -
Cec11g1017 1258 FunFam Putative lysine-specific demethylase JMJ16 1028 1166 - -
Cec11g1017 1258 MobiDBLite consensus disorder prediction 1175 1204 - -
Cec11g1017 1258 ProSiteProfiles FYR domain FYRC motif profile. 1082 1172 IPR003889 GO:0005634(InterPro)
Cec11g1017 1258 SMART fyrc_3 1086 1180 IPR003889 GO:0005634(InterPro)
Cec11g1017 1258 MobiDBLite consensus disorder prediction 948 972 - -
Cec11g1017 1258 Gene3D Cupin 155 533 - -
Cec11g1017 1258 PANTHER LYSINE-SPECIFIC DEMETHYLASE 158 954 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cec11g1017 1258 Pfam JmjC domain, hydroxylase 416 532 IPR003347 -
Cec11g1017 1258 Pfam F/Y rich C-terminus 1084 1168 IPR003889 GO:0005634(InterPro)
Cec11g1017 1258 SMART JmjN_1 169 210 IPR003349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1017 K11446 - - csv:101208186 2281.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0269 Cec-Chr1:2690253 Cec11g1017 Cec-Chr11:18241553 8.20E-93 dispersed
Cec01g0905 Cec-Chr1:10670214 Cec11g1017 Cec-Chr11:18241553 2.50E-235 dispersed
Cec09g0779 Cec-Chr9:7151278 Cec11g1017 Cec-Chr11:18241553 6.50E-173 dispersed
Cec09g1160 Cec-Chr9:11565439 Cec11g1017 Cec-Chr11:18241553 3.20E-52 dispersed
Cec11g1017 Cec-Chr11:18241553 Cec10g0141 Cec-Chr10:1360284 1.10E-55 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec11g1017 . 26 1257 JUMONJI Transcription Factor Family AT1G08620 54.2 0.0e+00 1241.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30533 PF02373 JmjC 1.80E-44 CL0029 Cec TR