Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1058 ATGGCCACTGTTTCTTGCCAACCTTCCGATTTGGCACCGCTTCTCAGCTCAGCAGCCACCGCGAATTCAACCGCCATAGCCGAGTTCCTATGCTCAAGATTCACCATCATAGCCACCACTTTCAGCTCCACCACCTACGCCGTCGACAACACATACCTCCTCTTCTCCGCGTACCTCGTCTTCGCCATGCAGCTGGGGTTTGCCATGCTTTGTGCTGGCTCGGTCCGTGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTTGACGCCGCTGCCGGTGGCCTCTCCTACTACCTCTTTGGCTTTGCCTTTGCCTTTGGTGCCCCCTCCAACTCCTTCATCGGCCGCCACTTTTTTGACCTCTCCAGTGTCCCTAACCCCTCCACTGATTATAGCTTCTTTCTCTATCAATGGGCTTTTGCTATTGCCGCTGCAGGCATCACTAGTGGCTCCATAGCTGAACGAACTCAATTCGTCGCCTACCTCATCTATTCAACTATTCTAACTGGATTCATCTATCCTATAGTCTCCCACTGGTTCTGGTCTGCTAACGGGTGGGCCAGCCCAACCCGACCCAACAATCTCCTATTCAACTCAGGTGCAATCGACTTCGCTGGGTCAGGTGTGGTCCACATGGTTGGTGGCATAGCTGGCCTATGGGGAGCTTTAATCGAAGGCCCTCGAATCGGCCGGTTTGATCGATCTGGCCGATCTGTTGCCCTTCGAGGCCACAGTGCCTCCTTAGTGGTTCTCGGCTCCTTCCTCCTCTGGTTCGGCTGGTACGGATTTAACTCCGGCTCATTCCTAACAATCTCCAAATCCTACAATGACGGTCGTCCTTATTACGGCCAATGGAGTGCCATAGGTCGAACTGGAGTCACCACAACACTAGCTGGATGCACAGCTGCCTTAACAACCCTCTTTGCAAAACGCCTATTAGTTGGGCATTGGAATGTAATCGACGTGTGCAACGGCCTATTGGGCGGGTTCGCCGCCATCACATCCGGTTGTGCTGTGGTGGAGCCATGGGCGGCAGTGATATGTGGTTTCGTAGCATCATGGGTGTTAATTGGGTTAAACAAGCTAGCCGAGAGGGTGAGCTATGACGACCCACTAGAGGCGGCACAATTGCATGGCGGGTGTGGCGCGTGGGGTTTGATATTCACCGGATTATTTGCGACGAAGAAATACGTCGGTGAGGTATATCAAGCCGGGCGGCCGTACGGATTGTTGATGGGCGGTGGAGGGAGGCTGCTGGCAGCGCAGGTGGTGGAGATAGTAGCGATAGTCGGTTGGGTGTCTGTGACAATGGGGGGATTGTTTTATGGGCTGAAGAAAGGAAAACTATTAAGAATATCAAGAGAGGATGAAATGGCAGGGATGGATTTGACAAGGCATGGGGGATTTGCTTATGTATATAATGATGAGGAAGATCTATCAGAGAAGCCTTCAGGGTTTATGATGAGAAGGATTGAACCTACCGATGCTAGTTCTCTCGAGGAGCATACTTCTGCGATTGGGGCTGTTTGA 1533 52.32 MATVSCQPSDLAPLLSSAATANSTAIAEFLCSRFTIIATTFSSTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFDLSSVPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTILTGFIYPIVSHWFWSANGWASPTRPNNLLFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNSGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFAKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLIGLNKLAERVSYDDPLEAAQLHGGCGAWGLIFTGLFATKKYVGEVYQAGRPYGLLMGGGGRLLAAQVVEIVAIVGWVSVTMGGLFYGLKKGKLLRISREDEMAGMDLTRHGGFAYVYNDEEDLSEKPSGFMMRRIEPTDASSLEEHTSAIGAV 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20112329 20114354 + CePI673135_11g010580.1 Cec11g1058 216270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1058 510 NCBIfam ammonium transporter 49 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cec11g1058 510 FunFam Ammonium transporter 30 487 - -
Cec11g1058 510 SUPERFAMILY Ammonium transporter 46 453 - -
Cec11g1058 510 PANTHER AMMONIUM TRANSPORTER 18 478 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cec11g1058 510 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cec11g1058 510 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cec11g1058 510 Gene3D Ammonium transporter AmtB like domains 31 487 IPR029020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec11g1057 Cec-Chr11:19959240 Cec11g1058 Cec-Chr11:20112329 1.70E-262 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1058 K03320 - csv:101217871 895.19