Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1097 ATGGAGCATGGAGATGTTGTGTCGAAGGGCATGGTGTCAGACCCTTCAAGTTCGTACAAAAAAATCATAATAGTTGCGGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTCCAGCTTTCGTTGCTGACACCTTACGTACAGCAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGTGGGCCATTATCAGGGCTTATTGTCCAACCCACTGTTGGATATTACAGCGATCGTTGCACTTCTAGGTTTGGTCGTCGTCGACCATTCATTGCTGCTGGGGCTGGCTTTGTGGCGGCTGCAGTTTTCCTCATTGGCTTTGCTGCAGATATTGGGCATGCAGCGGGAGATCAACTTGCTGCACGCACAAAACCAAGGGCTGTAGCCATATTTGTAGTCGGATTCTGGGTTCTTGATGTCGCTAACAACATGCTGCAAGGCCCTTGTAGAGCTTTGTTGGCAGATATGTCAGGTACCAACCACAAGAAGATGAGAATGGCCAATGGTTTTTTCTCCTTCTTCATGGGCGTAGGGAATGTTTTGGGTTACGCAGCTGGGTCCAATAACACACTCTATAAAGTCCTTCCCTTCACAATAACCAAAGCATGTGACACTTACTGTGCCAACCTCAAAACATGCTTCTTGATCGACATTGTGTTTCTCCTCCTCATTACCACCTTCGCCGTGTTTACAGTCAGCGAGAAGCAATTTGAGCGCTTGGAGATTGACGAAGAAGCACCACCCTTTTTCGGGAAGTTGCTTGGAGCACTCAAGAAGTTGGAGAAGCCCATGTGGATCTTGTTACTCGTAACAGCTTTGAACTGGATTGGTTGGTTCCCATTTATAATGTATGACACTGACTGGATGGGTTTGGAAGTGTATGGAGGAAAGCCAAATGGAACTCCAGAACAAGTCAAGTTCTATGACCTTGGTGTTCGTTCTGGGGCCCTTGGGTTGATGATAAACTCCTTTGTTCTAGGATTTTCAGCTTTAGCGATTGAGCCAATTAGCCGTATTCTAGGAGGTCTCAGGTGGTGGTGGGGAATTGTGAACATCATATTCACCATTTGCATGGGATCCACCGTCGTTGTTACAAAGGTTGCTGAGCGCTGGAGGTCCGTTAACGGTTTGCGCCTTCCTCCCGCGAACGTTAGGGCCGGAGCTTTTTCCATCTTTGCAGTCTTGGGTATTCCACTATCGGTCACTTTTAGCGTTCCCTTTGCACTTGCATCCATCTTTTCTTCAGAATCTGATGCGGGTCAAGGCCTCTCTTTGGGAATTCTCAACCTCTTCATTGTCATCCCACAGTTCATTGTGTCTGCAGTTAGTGGACCTTTAGATGCAGCTTTCGGAGGTGGAAACTTACCCGCATTCGTACTGGGTGGAATTGCTTCTTTTGCAAGCGCAATGTGCGCTATGTTCGTCCTTCCAGATCCACCACCTCAATCCGAAGTCTCCTTGACAGTGGGGGCTGGCCATTGA 1488 47.78 MEHGDVVSKGMVSDPSSSYKKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIAAGAGFVAAAVFLIGFAADIGHAAGDQLAARTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSGTNHKKMRMANGFFSFFMGVGNVLGYAAGSNNTLYKVLPFTITKACDTYCANLKTCFLIDIVFLLLITTFAVFTVSEKQFERLEIDEEAPPFFGKLLGALKKLEKPMWILLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPNGTPEQVKFYDLGVRSGALGLMINSFVLGFSALAIEPISRILGGLRWWWGIVNIIFTICMGSTVVVTKVAERWRSVNGLRLPPANVRAGAFSIFAVLGIPLSVTFSVPFALASIFSSESDAGQGLSLGILNLFIVIPQFIVSAVSGPLDAAFGGGNLPAFVLGGIASFASAMCAMFVLPDPPPQSEVSLTVGAGH 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21653634 21655213 + CePI673135_11g010970.1 Cec11g1097 216309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1097 495 Gene3D MFS general substrate transporter like domains 16 486 IPR036259 -
Cec11g1097 495 CDD MFS_SLC45_SUC 31 476 - -
Cec11g1097 495 Pfam MFS/sugar transport protein 28 279 - -
Cec11g1097 495 NCBIfam sucrose/proton symporter 18 482 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Cec11g1097 495 SUPERFAMILY MFS general substrate transporter 21 484 IPR036259 -
Cec11g1097 495 PANTHER SUGAR TRANSPORTER 14 477 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1097 K15378 - - csv:116401998 888.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1231 Cec-Chr8:24260491 Cec11g1097 Cec-Chr11:21653634 3.90E-126 dispersed
Cec09g2296 Cec-Chr9:39818456 Cec11g1097 Cec-Chr11:21653634 2.50E-114 dispersed
Cec11g1097 Cec-Chr11:21653634 Cec11g1104 Cec-Chr11:22016566 8.70E-288 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec11g1097 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec11g1104 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec08g1231 . 32 477 Sucrose Transporter Gene Family AT1G22710 51.3 5.7e-133 471.5
Cec11g1097 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec11g1104 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT2G14670 52.1 2.0e-130 463.0
Cec11g1097 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec11g1104 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec08g1231 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 4.2e-111 398.7
Cec09g2296 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 1.2e-182 636.3
Cec11g1097 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec11g1104 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G06170 50.7 7.2e-125 444.5
Cec11g1097 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec11g1104 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G43610 51.4 5.3e-128 454.9
Cec08g1231 . 18 478 Sucrose Transporter Gene Family AT1G09960 70.6 8.1e-196 680.2
Cec11g1097 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1104 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1097 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec11g1104 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.4 3.3e-128 455.7
Cec11g1097 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1104 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1097 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec11g1104 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.4 3.3e-128 455.7
Cec11g1097 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec11g1104 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec08g1231 . 32 477 Sucrose Transporter Gene Family AT1G22710 51.3 5.7e-133 471.5
Cec09g2296 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 1.2e-182 636.3
Cec08g1231 . 18 478 Sucrose Transporter Gene Family AT1G09960 70.6 8.1e-196 680.2
Cec11g1097 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1104 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1097 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1104 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1097 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec11g1104 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G43610 51.4 5.3e-128 454.9
Cec11g1097 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec11g1104 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec08g1231 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 4.2e-111 398.7
Cec11g1097 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec11g1104 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT2G14670 52.1 2.0e-130 463.0
Cec11g1097 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec11g1104 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G06170 50.7 7.2e-125 444.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60