Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1104 ATGGAGCATGGAGATGTTGTGTCGAAGGGCATGGTGTCAGACCCTTCAAGTTCGTACAAAAAAATCATAATAGTTGCGGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTCCAGCTTTCGTTGCTGACACCTTACGTACAGCAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGTGGGCCATTATCAGGGCTTATTGTCCAACCCACTGTTGGATATTACAGCGATCGTTGCACTTCTAGGTTTGGTCGTCGTCGACCATTCATTGCTGCTGGGGCTGGCTTTGTGGCGGCTGCAGTTTTCCTCATTGGCTTTGCTGCAGATATTGGGCATGCAGCGGGAGATCAACTTGCTGCACGCACAAAACCAAGGGCTGTAGCCATATTTGTAGTCGGATTCTGGGTTCTTGATGTCGCTAACAACATGCTGCAAGGCCCTTGTAGAGCTTTGTTGGCAGATATGTCAGGTACCAACCACAAGAAGATGAGAATGGCCAATGGTTTTTTCTCCTTCTTCATGGGCGTAGGGAATGTTTTGGGTTACGCAGCTGGGTCCAATAACACACTCTATAAAGTCCTTCCCTTCACAATAACCAAAGCATGTGACACTTACTGTGCCAACCTCAAAACATGCTTCTTGATCGACATTGTGTTTCTCCTCCTCATTACCACCTTCGCCGTGTTTACAGTCAGCGAGAAGCAATTTGAGCGCTTGGAGATTGACGAAGAAGCACCACCCTTTTTCGGGAAGTTGCTTGGAGCACTCAAGAAGTTGGAGAAGCCCATGTGGATCTTGTTACTCGTAACAGCTTTGAACTGGATTGGTTGGTTCCCATTTATAATGTATGACACTGACTGGATGGGTTTGGAAGTGTATGGAGGAAAGCCAAATGGAACTCCAGAACAAGTCAAGTTCTATGACCTTGGTGTTCGTTCTGGGGCCCTTGGGTTGATGATAAACTCCTTTGTTCTAGGATTTTCAGCTTTAGCGATTGAGCCAATTAGCCGTATTCTAGGAGGTCTCAGGTGGTGGTGGGGAATTGTGAACATCATATTCACCATTTGCATGGGATCCACCGTCGTTGTTACAAAGGTTGCTGAGCGCTGGAGGTCCGTTAACGGTTTGCGCCTTCCTCCCGCGAACGTTAGGGCCGGAGCTTTTTCCATCTTTGCAGTCTTGGGTATTCCACTATCGGTCACTTTTAGCGTTCCCTTTGCACTTGCATCCATCTTTTCTTCAGAATCTGATGCGGGTCAAGGCCTCTCTTTGGGAATTCTCAACCTCTTCATTGTCATCCCACAGTTCATTGTGTCTGCAGTTAGTGGACCTTTAGATGCAGCTTTCGGAGGTGGAAACTTACCCGCATTCGTACTGGGTGGAATTGCTTCTTTTGCAAGCGCAATGTGCGCTATGTTCGTCCTTCCAGATCCACCACCTCAATCCGAAGTCTCCTTGACAGTGGGGGCTGGCCATTGA 1488 47.78 MEHGDVVSKGMVSDPSSSYKKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIAAGAGFVAAAVFLIGFAADIGHAAGDQLAARTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSGTNHKKMRMANGFFSFFMGVGNVLGYAAGSNNTLYKVLPFTITKACDTYCANLKTCFLIDIVFLLLITTFAVFTVSEKQFERLEIDEEAPPFFGKLLGALKKLEKPMWILLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPNGTPEQVKFYDLGVRSGALGLMINSFVLGFSALAIEPISRILGGLRWWWGIVNIIFTICMGSTVVVTKVAERWRSVNGLRLPPANVRAGAFSIFAVLGIPLSVTFSVPFALASIFSSESDAGQGLSLGILNLFIVIPQFIVSAVSGPLDAAFGGGNLPAFVLGGIASFASAMCAMFVLPDPPPQSEVSLTVGAGH 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22016566 22018145 - CePI673135_11g011040.1 Cec11g1104 216316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1104 495 Gene3D MFS general substrate transporter like domains 16 486 IPR036259 -
Cec11g1104 495 CDD MFS_SLC45_SUC 31 476 - -
Cec11g1104 495 Pfam MFS/sugar transport protein 28 279 - -
Cec11g1104 495 NCBIfam sucrose/proton symporter 18 482 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Cec11g1104 495 SUPERFAMILY MFS general substrate transporter 21 484 IPR036259 -
Cec11g1104 495 PANTHER SUGAR TRANSPORTER 14 477 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1104 K15378 - - csv:116401998 888.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec11g1097 Cec-Chr11:21653634 Cec11g1104 Cec-Chr11:22016566 8.70E-288 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec11g1097 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec11g1104 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec08g1231 . 32 477 Sucrose Transporter Gene Family AT1G22710 51.3 5.7e-133 471.5
Cec11g1097 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec11g1104 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT2G14670 52.1 2.0e-130 463.0
Cec11g1097 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec11g1104 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec08g1231 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 4.2e-111 398.7
Cec09g2296 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 1.2e-182 636.3
Cec11g1097 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec11g1104 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G06170 50.7 7.2e-125 444.5
Cec11g1097 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec11g1104 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G43610 51.4 5.3e-128 454.9
Cec08g1231 . 18 478 Sucrose Transporter Gene Family AT1G09960 70.6 8.1e-196 680.2
Cec11g1097 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1104 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1097 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec11g1104 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.4 3.3e-128 455.7
Cec11g1097 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1104 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1097 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec11g1104 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.4 3.3e-128 455.7
Cec11g1097 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec11g1104 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec08g1231 . 32 477 Sucrose Transporter Gene Family AT1G22710 51.3 5.7e-133 471.5
Cec09g2296 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 1.2e-182 636.3
Cec08g1231 . 18 478 Sucrose Transporter Gene Family AT1G09960 70.6 8.1e-196 680.2
Cec11g1097 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1104 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1097 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1104 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1097 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec11g1104 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G43610 51.4 5.3e-128 454.9
Cec11g1097 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec11g1104 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec08g1231 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 4.2e-111 398.7
Cec11g1097 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec11g1104 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT2G14670 52.1 2.0e-130 463.0
Cec11g1097 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec11g1104 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G06170 50.7 7.2e-125 444.5