Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1157 ATGGCATCGACTTCCTCGAATTCGCCCTGTGCAGCTTGCAAATTTCTCCGGCGAAAATGCCAACCGGAATGTGTTTTTGCGCCTTATTTTCCGCCGGATCAGCCACAGAAATTCGCCAATGTTCATAAGGTATTCGGAGCCAGCAATGTCACAAAACTTCTCAATGAATTGCATCCTCACCAGAGAGAAGACGCTGTCAATTCGCTCGCCTATGAAGCCGATATGCGTCTTCGAGACCCTGTCTATGGCTGTGTTGGCGTAATTTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACCTGCGCCAAATCCGAACTCTCCAAATATCAAAACCTAGGCATCGGAAACCACGCCGCCCTGATTTCGCCGCCTTCCACTGTTTCCACCGTCGCTCATGGACAGCGGAACCACCAGCCGGCGTTCAATTTTGCTCGAGATCAACCGCATAGCCTCTATCACGATCAATCTTTTCCTCGAGATCAACAACAGCAACAGATGATGCTCCGACGAAGCTTCGATGGCGGTAGCAACTATGACGGACTTTTGGCTGTCAATGTCACCGCCAGTATCGGCAACCTCAGCCACCAGTTCCAGCAACCTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG 657 51.6 MASTSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSTVSTVAHGQRNHQPAFNFARDQPHSLYHDQSFPRDQQQQQMMLRRSFDGGSNYDGLLAVNVTASIGNLSHQFQQPRAAAGDDRRGTLDHS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23600517 23601173 - CePI673135_11g011570.1 Cec11g1157 216369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1157 218 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Cec11g1157 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 155 - -
Cec11g1157 218 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1438 Cec-Chr1:29030843 Cec11g1157 Cec-Chr11:23600517 4.40E-42 dispersed
Cec02g1407 Cec-Chr2:31271564 Cec11g1157 Cec-Chr11:23600517 2.70E-45 dispersed
Cec04g2202 Cec-Chr4:39766851 Cec11g1157 Cec-Chr11:23600517 3.30E-31 dispersed
Cec06g1923 Cec-Chr6:32617791 Cec11g1157 Cec-Chr11:23600517 1.10E-46 dispersed
Cec09g2038 Cec-Chr9:37418146 Cec11g1157 Cec-Chr11:23600517 4.60E-44 dispersed
Cec10g1600 Cec-Chr10:30392734 Cec11g1157 Cec-Chr11:23600517 2.20E-23 dispersed
Cec11g0606 Cec-Chr11:6664733 Cec11g1157 Cec-Chr11:23600517 7.20E-35 dispersed
Cec11g0629 Cec-Chr11:6922287 Cec11g1157 Cec-Chr11:23600517 1.90E-37 dispersed
Cec11g1157 Cec-Chr11:23600517 Cec10g1403 Cec-Chr10:28374804 1.70E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30539 PF03195 LOB 4.10E-43 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1157 - - - 0.0