Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1185 ATGAAGACGCCGGCGAACGGTGCCGCCGGTGCCGCCGGCGCGCCTAATTCCAACGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTGCCGCCGGCCGGTTACCACGTGGTGTATTTTCCTCAAGGCCACAGCGAACAGGTTGCAGCATCTTTGAGGAAAGATGTGGATGGCCAAGTCCCAAACTACCCAAATCTTCCTTCTAAGTTACTATGTTTGCTTCATAATGTAACATTACATGCTGACCCGGAAACAGATGAAGTATATGCTCAAATGACCCTACTGCCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCAGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACGAGCACTCATGGCGGGTTCTCCGTGCCTCGCCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGATTTCTCAATGCAACCCCCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATAATGTATGGACTTTCCGTCACATATATCGAGGGCAACCCAAACGCCATTTGCTAACAACTGGTTGGAGCTTATTTGTTAGTGGAAAGAGACTTCTTGCTGGCGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTGGGCATTAGACGAGCTAACAGGCAACCAACAAACTTATCATCATCAGTGTTGTCAAGTGATAGTATGCATATTGGTATTCTTGCAGCTGCTGCCCATGCTGCTGCAAACAATAGCCCTTTCACTGTCTTCTACAACCCGAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTTGCCAAATATTACAAGGCAGTGTCTGCAAACCAAATATCACTCGGAATGCGCTTCAGAATGATGTTCGAAACTGAAGAGTCTGGAACTAGAAGGTATATGGGCACTATTACTGGTATAAGTGATCTTGATCCTGTCCGATGGAAGGGCTCACAATGGCGTAATCTACAGGTTGGGTGGGATGAGTCGACTGGAGGAGAAAGACGAAATCGAGTCTCCATATGGGAGATTGAGCCTGTTATTGCTCCATTTTTCATTTGCCCCTCTCCATTTTTGAGATCTAAACGACCGAGGCAACCGGGAATGCCAGATGATGACTCCTCCGATTTGGATGGTATATTTAAAAGAACAATGTTTGGTGACGATTTTTGCATGAAAGATCCACAAGGATATCCTGGCCTAAACTTAGTTCAATGGATGAATATGCAAAATCCATCACTTTCAAATTCAATGCAGCCAAATTATATGCATTCGTTTTCTGGGTCTATGCTTCCAAACCTTGGTGGAGTTGATATTTCTAGGCAACTTGGTTTGTCAAATGCACAAATTCCTCAATCAAACAACATACAGTTCAATGCACAAAGGCTACTTTCTCAGGCTCAACAGTTAGATCAGCTACCTAAGCTACCGTCAAGTATGAACTCGTTGGGATCCGTGGTGCAGGCACCGCAACAGTTGGATGATATGTCTCAGCAGACCCGACAGAATTTGATTAACCAAAACGCAGTCTCGAGTCAGATTCAGGCTCAAATAATGCAGCAGCCTCACACTAATGGGATCCTACAGCAGCAAACTGCTTTGCAAAACCCGCAGCTTCAGAGAAATGTCCCTCAGAATCTGCAAATGCAGCAGCATCAGCAAATTTTAGGTCAAAATCAACAACAGACTATGAATCAGTCCCCGCTCCCAGAACAGTTAAATCATCAATTACAAATGTCGGATAATCAGGTTCAAATGCAGATGTTTCAGAAGTTTCAGCAGCAGCAGCAGCAATCAATTTTGGCTCAGCAGTCTGCTCTTCAGCCTGCTCAACTCACCCAACTACCGGAGCAGCAGAGACAGTCAGTGGATGCGTCCCAAAGCTTTTCTAGGTCCATGTCGACTAACCAAATGCTCGACATTCCTCAATCCACCCCAGCTGCAGGCCCTCCATCAAATGCGTTACCGCAGCAGACAGCAAATTGCAATAGCCAGACGAATAATCGATTCTCAAATCAGCATTTGCAACCGAAACTTCCACAACTACAGCAACCACCTCCATCTACTGTACTTTCCGATATGTCTAGGCCAATGGGACTTCCTCCTACCCAAACGAATAATCAGCTCTCTGCAGCTACTAGTAGTTTAATAACAGGAGCAGCAGGGGCTGGTCAATCTGGAATCACTGATGACATACCATCTTGCTCCACGTCACCTTCCACGAACAATTGTCCAAGTTTGGTTCAACCGGTAGCCAATGGAAGGGTTCATCGAACCACGGGATTGGTTGAGGATGTTGCTCAATCAGCTGCAACAATTTTCAGTTCAAATACATTGGATACCATGTCACCAAATGCCAACTTAGTGCATAAAGATTTGCCACAGAAGACTGCTGTTAAACCTTCACTGAATATTTCCAAGAATCAAAGCCATGGAATTTTTGCACAACAAACTTTCTTGAGTGGTGTTGTTGCTCAGACGGATTTCTTAGACACGTCATCCTCCACGACCTCAGCTTGCCTTTCTCAGAATGATACTCAGTTGCAGCAGAATAACATGATGTCTTTCAACTCACAGCCAATGTTATTTAAAGATAGTACTCAGGATTTGGAGGTACCGACAGATCTCCATAACATTCCGTACGGGGCTCATGTCGATGGACAAATGGTAACACAGTTAAATTCTGATCCTTTGTTAGACAAAGGCATTGGGGGTTTGGGGAAAGATTTCTCCAATAATTTTTCTTCTGGGGCCATGCTCACCACCTACGATGTACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCCCAATCATTTGGTATTCCAGACATGACATTTAATTCCATGGATTCAACAATTAACGATAATGCCTTCTTGAATAGAAACCAATGGGCTCCTCCACCTCCGTTCCAACGTATGCGAACCTACACCAAGGTTTACAAACGTGGAGCTGTTGGGAGATCTATTGATATCACCCGTTACTCGGGTTATGATGAGCTTAAACAAGACCTTGCCCGTAGGTTTGGTATCGAGGGACAATTGGAGGACAGGCAAAAAATAGGCTGGAAACTTGTTTATGTGGATCATGAAAATGACGTTTTACTCGTAGGCGACGACCCTTGGGAGGACTTTGTGAACTGTGTACGGAGCATCAAGATCCTTTCCCCACAGGAAGTCCAACAAATGAGCTTGGATGGAGATTTTGGCAATGGGCTCAAAGTTCATAGTGTCGAATATCAGTACGGCTACGATTCCCCATTGCAAGAATCTTGCAGCAATGAAGGAGATATAGCCAACCAACACTCAGCAATGGCTTTTAGCCATTCCCTGGTTAAATTTTCTGGACCTCTTATAGCCTAG 3426 44.78 MKTPANGAAGAAGAPNSNEGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLRKDVDGQVPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLLPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPSPFLRSKRPRQPGMPDDDSSDLDGIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQPNYMHSFSGSMLPNLGGVDISRQLGLSNAQIPQSNNIQFNAQRLLSQAQQLDQLPKLPSSMNSLGSVVQAPQQLDDMSQQTRQNLINQNAVSSQIQAQIMQQPHTNGILQQQTALQNPQLQRNVPQNLQMQQHQQILGQNQQQTMNQSPLPEQLNHQLQMSDNQVQMQMFQKFQQQQQQSILAQQSALQPAQLTQLPEQQRQSVDASQSFSRSMSTNQMLDIPQSTPAAGPPSNALPQQTANCNSQTNNRFSNQHLQPKLPQLQQPPPSTVLSDMSRPMGLPPTQTNNQLSAATSSLITGAAGAGQSGITDDIPSCSTSPSTNNCPSLVQPVANGRVHRTTGLVEDVAQSAATIFSSNTLDTMSPNANLVHKDLPQKTAVKPSLNISKNQSHGIFAQQTFLSGVVAQTDFLDTSSSTTSACLSQNDTQLQQNNMMSFNSQPMLFKDSTQDLEVPTDLHNIPYGAHVDGQMVTQLNSDPLLDKGIGGLGKDFSNNFSSGAMLTTYDVQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDNAFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGLKVHSVEYQYGYDSPLQESCSNEGDIANQHSAMAFSHSLVKFSGPLIA 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24283545 24291062 - CePI673135_11g011850.1 Cec11g1185 216397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1185 1141 Gene3D - 298 368 - -
Cec11g1185 1141 MobiDBLite consensus disorder prediction 1 21 - -
Cec11g1185 1141 Gene3D - 992 1085 - -
Cec11g1185 1141 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 652 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec11g1185 1141 MobiDBLite consensus disorder prediction 631 690 - -
Cec11g1185 1141 FunFam Auxin response factor 298 369 - -
Cec11g1185 1141 SUPERFAMILY DNA-binding pseudobarrel domain 123 263 IPR015300 -
Cec11g1185 1141 Pfam Auxin response factor 260 343 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec11g1185 1141 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677(InterPro)
Cec11g1185 1141 FunFam Auxin response factor 132 236 - -
Cec11g1185 1141 FunFam Auxin response factor 991 1085 - -
Cec11g1185 1141 Pfam B3 DNA binding domain 134 236 IPR003340 GO:0003677(InterPro)
Cec11g1185 1141 MobiDBLite consensus disorder prediction 568 587 - -
Cec11g1185 1141 SUPERFAMILY CAD & PB1 domains 1009 1075 - -
Cec11g1185 1141 Pfam AUX/IAA family 994 1081 IPR033389 -
Cec11g1185 1141 Gene3D - 132 235 IPR015300 -
Cec11g1185 1141 ProSiteProfiles PB1 domain profile. 996 1081 IPR053793 -
Cec11g1185 1141 MobiDBLite consensus disorder prediction 740 761 - -
Cec11g1185 1141 CDD B3_DNA 133 225 IPR003340 GO:0003677(InterPro)
Cec11g1185 1141 SMART B3_2 134 236 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec11g0032 Cec-Chr11:438194 Cec11g1185 Cec-Chr11:24283545 3.10E-17 dispersed
Cec11g0145 Cec-Chr11:1706992 Cec11g1185 Cec-Chr11:24283545 1.40E-245 dispersed
Cec11g1185 Cec-Chr11:24283545 Cec04g2197 Cec-Chr4:39695644 3.90E-166 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30541 PF02309 AUX_IAA 2.30E-07 CL0072 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1185 - - - 0.0