Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1200 ATGGATCCCCCAACCTCCAACCGTAGTCGTAGAACTACCAACAAATATGATCTCTACTCCACAGTTGTCATCCATTCCAATTCTGATTCCGACTCCGATAACAATCCCGACGATCGGAATCTTCACCGTCGACGAAGGCCGCCGAGCGAAGGACAAGACCTTTACGCCACAATACTCCATAAGGACGTTGATAAGCCCCGTGACGACGATGATGACGATGATTCCTCTCTCCCTCCTCTCCTCAAACGCCTTCCCAAGGATTTCGGTGGCGGAGCTCCAATTGACTACGAGGATGACCATGCTTTTGATTTCGATCACGATACTGAAGACTTCGGTACCATGATCGTCAAGACGGATAGGAATCGTCCTCGAAATCGCTCTGTGTCTTCATCAGTTTCGACCATGCCCCGGAAGAGAGCTGGCAGTGAAGAAGGCGACGACAGCGAGGAAGATGATGGTGATGGGTATTCTACGTTTGTGGTGAGGTCCACGGCCAGGTCGCGGAACAGGGAATCGGTTAGTGGAACTGTTGTTCGAAGGCCCGCTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACTTGAGGGGTCCACAATGGGCAGAGCGGTCGCGAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAGGGGAATGGATCACCGAGGAGTGAGGAAGGCGGTGGTCTGATACGCAGTAAGGTATCCTCGAGTTCGATTCCGGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTTGGAAAGGGGTCCTATGGGGCTGTATATAAAGCAAGGGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCGAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAAGCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGCGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATATGATGGAAAGGTGGATGTGTGGGCTCTTGGTGTCTCTGCTATTGAAATGGCCGAGGGGCTTCCTCCAAGATCGGCAGTGCATCCAATGAGGGTTTTATTCATGATATCGATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGCTGTTCCACGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGGGCATCGGCAATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGGACTTTAATGGCTCAGGAAGCACATAGTATTGCTCCAGATGCATCCGGAGATGGTACAATAGTAGCTGCAAATTTGAATCAAGATTATGGAGATACTGTTCCTTCAAAGCCTCAGAATAGTGGACTTCAGGTAGCAAATGAAATGGCAGCTAGTGGCACTTGGAGGAAGCAAGAGCAATCGGGCGCTGAACTTGTAGCAGAAGGTAATTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGGCCTCTCAACTGGATATTGGCACTGCTGAACCACCAACTGGTTCCTTACACAATGAGAGCCTATCCATTAGTGTAACTAGAGTCGACTCTAGTGTGCTGGATCGTACCAGAGGTATTGTGCGTAATATTCTTGATGGAAAATCGGATTCCACAATGCATGCATCTTCACCTTCATTTTTGGGTATTCATGAGCATAGCACGTTGAAGAATGAAACTGTCAGCCGGAAATCATTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAACACTGTACCCATTCCGTTTTTGAGGGCTACTGACATATCCCCTATTGCTTTGTTATCTGACAATGTCCTTGGAGGCATGCAGCACGACCATAGGGGTACTGTAGCTGTCGAAACGCTTCAGGAACTTTTCACTGGTGATGGACAATCAAAAAAGGGTCGTAGGGGTCAAAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTACGAAGATATGCCGCTTCAGGAGTTGCAGGCAACTCAAGAACAACAAACAATTCAAAATCTTTGTGATACACTTAGAACTATCCTCCGATTGTAG 2481 46.8 MDPPTSNRSRRTTNKYDLYSTVVIHSNSDSDSDNNPDDRNLHRRRRPPSEGQDLYATILHKDVDKPRDDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDHAFDFDHDTEDFGTMIVKTDRNRPRNRSVSSSVSTMPRKRAGSEEGDDSEEDDGDGYSTFVVRSTARSRNRESVSGTVVRRPAGSRSGSRDGGGGLEGSTMGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGLIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLMAQEAHSIAPDASGDGTIVAANLNQDYGDTVPSKPQNSGLQVANEMAASGTWRKQEQSGAELVAEGNFGTVIVHDGDENDKVASQLDIGTAEPPTGSLHNESLSISVTRVDSSVLDRTRGIVRNILDGKSDSTMHASSPSFLGIHEHSTLKNETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGMQHDHRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24899978 24915018 + CePI673135_11g012000.1 Cec11g1200 216412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1200 826 CDD STKc_MAP4K3_like 255 510 - -
Cec11g1200 826 ProSitePatterns Protein kinases ATP-binding region signature. 262 285 IPR017441 GO:0005524(InterPro)
Cec11g1200 826 MobiDBLite consensus disorder prediction 160 174 - -
Cec11g1200 826 Pfam Protein kinase domain 256 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g1200 826 MobiDBLite consensus disorder prediction 24 94 - -
Cec11g1200 826 MobiDBLite consensus disorder prediction 115 200 - -
Cec11g1200 826 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 231 788 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Cec11g1200 826 MobiDBLite consensus disorder prediction 31 50 - -
Cec11g1200 826 SUPERFAMILY Protein kinase-like (PK-like) 253 511 IPR011009 -
Cec11g1200 826 MobiDBLite consensus disorder prediction 213 252 - -
Cec11g1200 826 FunFam Aurora kinase A 248 337 - -
Cec11g1200 826 ProSiteProfiles Protein kinase domain profile. 256 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g1200 826 SMART serkin_6 256 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec11g1200 826 Gene3D Transferase(Phosphotransferase) domain 1 252 544 - -
Cec11g1200 826 FunFam serine/threonine-protein kinase dst1 isoform X1 253 543 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1200 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0761 Cec-Chr7:15446773 Cec11g1200 Cec-Chr11:24899978 5.50E-171 dispersed
Cec07g0762 Cec-Chr7:15458882 Cec11g1200 Cec-Chr11:24899978 3.00E-269 dispersed
Cec11g1200 Cec-Chr11:24899978 Cec11g1834 Cec-Chr11:32501675 1.30E-70 dispersed
Cec11g1200 Cec-Chr11:24899978 Cec03g1594 Cec-Chr3:34045737 7.80E-39 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec11g1834 . 69 754 MAP Kinase Kinase Kinase Kinase AT1G53165 63.9 2.9e-225 778.5
Cec11g1200 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.3e-67 253.4
Cec07g0762 . 315 567 MAP Kinase Kinase Kinase Kinase AT1G53165 53.5 2.4e-65 247.3
Cec11g1834 . 69 753 MAP Kinase Kinase Kinase Kinase AT3G15220 65.8 4.7e-231 797.7
Cec11g1200 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.5e-67 254.6
Cec07g0762 . 315 567 MAP Kinase Kinase Kinase Kinase AT3G15220 52.0 1.4e-65 248.1
Cec11g1200 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 4.1e-242 834.7
Cec07g0762 . 49 567 MAP Kinase Kinase Kinase Kinase AT1G69220 61.5 1.8e-152 537.0
Cec07g0761 . 46 364 MAP Kinase Kinase Kinase Kinase AT1G69220 52.9 8.1e-81 298.9
Cec09g2018 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.3 1.9e-253 872.1
Cec05g0525 . 25 385 MAP Kinase Kinase Kinase Kinase AT5G14720 50.3 8.7e-97 351.7
Cec10g0089 . 35 749 MAP Kinase Kinase Kinase Kinase AT4G24100 65.3 3.1e-249 858.2
Cec10g0089 . 39 750 MAP Kinase Kinase Kinase Kinase AT4G10730 65.2 3.3e-248 854.7
Cec10g1294 . 4 478 MAP Kinase Kinase Kinase Kinase AT1G70430 51.9 2.6e-132 469.5
Cec10g0089 . 33 397 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 3.6e-118 422.5
Cec10g1294 . 1 671 MAP Kinase Kinase Kinase Kinase AT1G79640 59.7 9.1e-216 746.9
Cec09g2018 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.6e-103 372.9
Cec10g1294 . 8 324 MAP Kinase Kinase Kinase Kinase AT1G23700 53.1 2.0e-87 320.1
Cec10g0089 . 43 334 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.3e-75 280.0
Cec05g0525 . 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.3 9.0e-144 507.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72410 PF00069 Pkinase 7.40E-68 CL0016 Cec PK