Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1209 ATGGAGAACATTCTGGACGAGTATGGGTATTACTGGGAAACGAATATGTTTCTGCAGACGCAAGAGTTCGACAGTTGGGGATTGGATGAAGCATTTTACGGTTCTTACGACTCGAGCTCGCCCGACGGAACGCTGTCGTCGTTAGAGGCGTCCAAGAACATCTTATCGGAGAGGAATCGGAGGAAGAAGCTCAACGATAGGCTTCTTGCTCTCAGAGCTGTGGTCCCTAATATCACCAAAATGGACAAGGCGTCGATAATAAAAGACGCGATCGAGTACATCCAAGAGCTGCGAGCGCAAGAGAAGAGAATCGAATCGGAGATTTCAGATCTGGAATCAGGCAAAATCGAGAACAGAACAACAAATGAAGAAGACGACGACCATAACGGCAGTGGAATCTCCAAGAAGAGAATGAACAATTGTAATCGACAAGTACGAGAGAAGCCATCCTCAATCCCGATCGAAATTCTCGATTTGAGCGTGAATTACATGGGAGAGAAAACGATGGTGGTGAGTTTGACGTGCGGAAGAAGAAGCGACGCGGTATTAAAAGTTAGTCAAGTAATTGAATCGCTGAAGCTTAAGATTATTACGGCCAATATCATCGTCGTTGCCAACAGAGTTTTGAATACGCTCTTCCTTGAGGCAGAGAGAGCAGAGGAAGAGGAACTTAAGGTAAAAATAGAAAGAGCCATTGCAGCAATTAGTGATCAACAAAGCCCTATGAGCATTTAA 735 44.9 MENILDEYGYYWETNMFLQTQEFDSWGLDEAFYGSYDSSSPDGTLSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAQEKRIESEISDLESGKIENRTTNEEDDDHNGSGISKKRMNNCNRQVREKPSSIPIEILDLSVNYMGEKTMVVSLTCGRRSDAVLKVSQVIESLKLKIITANIIVVANRVLNTLFLEAERAEEEELKVKIERAIAAISDQQSPMSI 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25188406 25196543 - CePI673135_11g012090.1 Cec11g1209 216421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1209 244 SMART finulus 54 103 IPR011598 GO:0046983(InterPro)
Cec11g1209 244 Coils Coil 202 234 - -
Cec11g1209 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983(InterPro)
Cec11g1209 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 114 IPR036638 GO:0046983(InterPro)
Cec11g1209 244 Gene3D - 47 114 IPR036638 GO:0046983(InterPro)
Cec11g1209 244 Coils Coil 87 114 - -
Cec11g1209 244 MobiDBLite consensus disorder prediction 110 138 - -
Cec11g1209 244 Pfam Helix-loop-helix DNA-binding domain 54 98 IPR011598 GO:0046983(InterPro)
Cec11g1209 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 49 225 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cec11g1209 244 MobiDBLite consensus disorder prediction 110 133 - -
Cec11g1209 244 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1223 Cec-Chr8:24160848 Cec11g1209 Cec-Chr11:25188406 1.60E-11 dispersed
Cec10g0170 Cec-Chr10:1673160 Cec11g1209 Cec-Chr11:25188406 1.20E-10 dispersed
Cec11g1048 Cec-Chr11:19667171 Cec11g1209 Cec-Chr11:25188406 1.10E-10 dispersed
Cec11g1209 Cec-Chr11:25188406 Cec11g1540 Cec-Chr11:29671983 1.80E-12 dispersed
Cec02g2271 Cec-Chr2:40060324 Cec11g1209 Cec-Chr11:25188406 5.30E-17 transposed
Cec05g2764 Cec-Chr5:38087012 Cec11g1209 Cec-Chr11:25188406 6.90E-19 transposed
Cec10g1370 Cec-Chr10:27966263 Cec11g1209 Cec-Chr11:25188406 1.30E-11 transposed
Cec11g1209 Cec-Chr11:25188406 Cec06g1568 Cec-Chr6:29284668 2.10E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30542 PF00010 HLH 7.40E-11 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1209 - - - 0.0