Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1308 ATGGAACATGAACTAATGAACGGCCAAGATTTCATCTTCCGATCAAAGCTCCCAGACATATACATCCCAAACCACCTCCCTCTCCACACCTATTGCTTTGAACACCTCTCCCAATTCCAGCACCGCCCTTGCCTCATCAACGGCGCCACCGGCGAGGTCCACACCTACGCCGCGGTCGACCTAGCAGCCAGACGTGTCGCTGCCGGGCTGAGCAAGATCGGCGTTGGACAAGGTGACGTCATAATGCTCATGCTCCAAAACAGCCCCGAGTTCGTGTTTGCGTTCCTCGGCGCGTCGTTTGCCGGTGCAATTAGCACCACGGCGAACCCGCTGTACAAGCCAGGGGAGATTGCGAGGCAGGCGGCAACGGCGAGGGCGAAGGTAATAATTACGCAGGCGGAGTTCGTGGAGAAGGTTAGGGGATTTGCTGTGGAAAATGGGGTGAAGATATTGTGTACGGATTCCCCGCCGGCGGGTTGTTTGAGATTCTCGGAGGTTATGGAGGCGGATGAAAATGAGATTCCGGCGGTGAAGATTAATTCAAATGATGTTGTTGCTCTTCCTTTTTCGTCTGGAACTACTGGAATTCCTAAAGGGGTTATGTTAACGCATAAATCTCTTGTCACAAGCGTTGCTCAACAGGTGGACGGAGAGAATCCAAATGTAAACTTGAATAGCAACGATGTGATCATATGTGTTCTTCCATTATTCCATATCTATTCTCTCAACTCCGTTCTTCTATGTGGACTACGTGTCGGCGCCGCCATTCTCATCCTCCAAAAATACGACATGTCGTCCCTTCTTCACCTCATTCAAACCCACAAGGCCACAATTGCTCCATTCGTTCCTCCCATCGTCTTGGACTTCGCCAAAAACCCCGACATCCACGGTTACGACTTGTCGTCCATCAGAATCGTCATGTCAGGCGCGGCGCCTATGGGGAAGGACCTTGAGGATACCGTCAAAGCTAGGCTCTCCAATGCCACGCTCGGACAGGGGTATGGAATGACTGAGGCAGGGCCAGTGCTATCGATGTGTTTGGCGTTTGCAAAGGAACCTTTCAAGGTTAAATCAGGTGCGTGCGGGACCGTCGTAAGGAATGCTGAGATGAAGATCATACACCCTGACACTTCCGTATCTTTGCCACGTAATCACCCTGGTGAGATCTGCATACGTGGCTCCCAGATCATGAAAGGTTATCTCAACAACAAAGAAGCAACAGAGAAGACTATAGACAAAGACGGATGGCTCCACACAGGAGACTTAGGGTTCATCGACGATAACGACGAGATCTTCATCGTCGACCGATTGAAGGAACTGATCAAATACAAGGGATATCAAGTTGCCCCAGCAGAGCTTGAAGCTCTCTTGACTTCAAACCCTAACATTTCTGCAGCTGCTGTCATACCTATGGAAGATGAAGCAGCAGGAGAGATCCCTGTTGCATTTGTTGTTAGATCTAATGGTTCCAAGATTAGTGAAAATGATATCAAAAAGTATATTTCGGATCAGGTTATATATTACAAAAAAATCAGAAAGGTTTTCTTTGTGGACTCAATTCCAATTGCCCCTTCAGGCAAGATATTGAGGAAGGTTTTAAAAGCTCAGTTAGAGGCTGGTGCCTTTTAA 1629 48.68 MEHELMNGQDFIFRSKLPDIYIPNHLPLHTYCFEHLSQFQHRPCLINGATGEVHTYAAVDLAARRVAAGLSKIGVGQGDVIMLMLQNSPEFVFAFLGASFAGAISTTANPLYKPGEIARQAATARAKVIITQAEFVEKVRGFAVENGVKILCTDSPPAGCLRFSEVMEADENEIPAVKINSNDVVALPFSSGTTGIPKGVMLTHKSLVTSVAQQVDGENPNVNLNSNDVIICVLPLFHIYSLNSVLLCGLRVGAAILILQKYDMSSLLHLIQTHKATIAPFVPPIVLDFAKNPDIHGYDLSSIRIVMSGAAPMGKDLEDTVKARLSNATLGQGYGMTEAGPVLSMCLAFAKEPFKVKSGACGTVVRNAEMKIIHPDTSVSLPRNHPGEICIRGSQIMKGYLNNKEATEKTIDKDGWLHTGDLGFIDDNDEIFIVDRLKELIKYKGYQVAPAELEALLTSNPNISAAAVIPMEDEAAGEIPVAFVVRSNGSKISENDIKKYISDQVIYYKKIRKVFFVDSIPIAPSGKILRKVLKAQLEAGAF 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27128232 27135670 - CePI673135_11g013080.1 Cec11g1308 216520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1308 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 534 - GO:0016405(PANTHER)
Cec11g1308 542 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Cec11g1308 542 Pfam AMP-binding enzyme 34 401 IPR000873 -
Cec11g1308 542 SUPERFAMILY Acetyl-CoA synthetase-like 12 539 - -
Cec11g1308 542 Gene3D - 438 540 IPR045851 -
Cec11g1308 542 CDD 4CL 22 533 - -
Cec11g1308 542 Gene3D - 4 437 IPR042099 -
Cec11g1308 542 FunFam 4-coumarate--CoA ligase 2 439 540 - -
Cec11g1308 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 438 - -
Cec11g1308 542 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0439 Cec-Chr7:4554224 Cec11g1308 Cec-Chr11:27128232 7.30E-11 dispersed
Cec11g1308 Cec-Chr11:27128232 Cec11g1627 Cec-Chr11:30532692 4.50E-19 dispersed
Cec02g0781 Cec-Chr2:8944051 Cec11g1308 Cec-Chr11:27128232 3.60E-181 transposed
Cec04g2225 Cec-Chr4:40013238 Cec11g1308 Cec-Chr11:27128232 6.60E-24 transposed
Cec10g2018 Cec-Chr10:34944164 Cec11g1308 Cec-Chr11:27128232 1.20E-102 transposed
Cec11g1410 Cec-Chr11:28310849 Cec11g1308 Cec-Chr11:27128232 2.40E-108 transposed
Cec10g1289 Cec-Chr10:27002219 Cec11g1308 Cec-Chr11:27128232 2.90E-207 transposed
Cec11g1308 Cec-Chr11:27128232 Cec06g1526 Cec-Chr6:28765352 1.00E-201 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1308 K01904 - csv:101210868 969.918