Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1317 ATGGGTTTTATTGAAGAATACTTGCCAGCAATGGCTATGTTTGGGCTTCAAGTGACTTATGCCATAATGGCTCTTATCTCCCGGGCTGCCCTTTTGAAGGGCATGAGTCCTAGAGTTTTTGTTGTTTATAGGCAAGCCATTGCCACTCTCTTTATTGCACCCATTGCTTATTTCTCCAGGTCGAAATCTAGGAGGGTGTCTTTGAACTTGAAGAGCTTTTCTCTAATCTTCCTTGCTTCTCTCGTCGGTGTGACGATGAACCAAAATGTTTACTTTGAGGGAGTTTTTTTAGTTAGCTCGTCAATGGCAACGGCAATGACTAATTTGATTCCTGCAGTGACGTTTGTTATAGCAACGATAGTCGGCATGGAGAATTTAAGGTTGGGAAGCTTGAGGAGCATCGCAAAGATTGGAGGGACAGTGGTTTGTGTGAGTGGGGCCATGTGTATGGCTCTTCTAAGGGGTCCAAAGCTTCTCAATACAACACAAGGTTTTGTGGTGAAATCTACATTATTTAGTGTGGAAAGTGGAAGTCACCATGCTTGGTTATTGGGTTCCTTGTGTCTCTTTGGGAGTTGTTGTTGCTGGTCAATTTGGTTGATTTTGCAGGTACCAGCTTCAGCAAGCTATCCCGACAACTTATCTTTATCGGCATGGATGTGTTTCTTTGCCACAATTCAATCGATCATTGTTACTCTATTGGTAGAGCCAATCAATCTACAAACTTGGAAAATACATTCAACCATTGAACTTATTTGTTATCTCTTCTCAGGCATTGTTGGGTCAGGGGTTGCCTTCTTTGTTCAAGCTTGGTGTGTTTCAAAAAGAGGCCCTGTCTTCTCAGCAATGTTCAACCCTCTTTGCACCATTGTTACAACTATTTTGGCAGCTATAGTTCTTCATGAGGAAATTTTTACTGGAAGCTTGTTGGGGGGTGTGGCTGTAATTATTGGATTGTACATTGTTCTTTGGGGAAAAGCAAAAGATTATGTGAAGGAAGAAGGCAAAGAAAAGCAAAGTGTTGAAAAAGAAGAAGAGAATTGTGAATCAGCTGAGAGAATTAGCAATTGTCAAATTGATTTGGAGGAACCACTTTTGTCTAAAGAATCATGA 1113 41.15 MGFIEEYLPAMAMFGLQVTYAIMALISRAALLKGMSPRVFVVYRQAIATLFIAPIAYFSRSKSRRVSLNLKSFSLIFLASLVGVTMNQNVYFEGVFLVSSSMATAMTNLIPAVTFVIATIVGMENLRLGSLRSIAKIGGTVVCVSGAMCMALLRGPKLLNTTQGFVVKSTLFSVESGSHHAWLLGSLCLFGSCCCWSIWLILQVPASASYPDNLSLSAWMCFFATIQSIIVTLLVEPINLQTWKIHSTIELICYLFSGIVGSGVAFFVQAWCVSKRGPVFSAMFNPLCTIVTTILAAIVLHEEIFTGSLLGGVAVIIGLYIVLWGKAKDYVKEEGKEKQSVEKEEENCESAERISNCQIDLEEPLLSKES 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27348486 27353276 - CePI673135_11g013170.1 Cec11g1317 216529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1317 370 PANTHER WAT1-RELATED PROTEIN 11 340 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cec11g1317 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 219 327 - -
Cec11g1317 370 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020(InterPro)
Cec11g1317 370 Pfam EamA-like transporter family 12 142 IPR000620 GO:0016020(InterPro)
Cec11g1317 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1317 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1470 Cec-Chr6:28172946 Cec11g1317 Cec-Chr11:27348486 4.10E-88 dispersed
Cec09g1995 Cec-Chr9:36970864 Cec11g1317 Cec-Chr11:27348486 1.70E-09 dispersed
Cec11g1317 Cec-Chr11:27348486 Cec11g1619 Cec-Chr11:30471817 7.00E-56 dispersed
Cec07g1061 Cec-Chr7:25714993 Cec11g1317 Cec-Chr11:27348486 3.90E-41 transposed
Cec11g1317 Cec-Chr11:27348486 Cec06g1469 Cec-Chr6:28166232 1.30E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g750 . . . . . . . . . Cmo11g00429 . Cma12g00827 . Car12g00739 Sed08g0542 Cpe04g01274 . Bhi02g00827 Tan09g1621 Cmetu02g1685 . Hepe09g0531 . . Cla11g01236 Cam11g1297 Cec11g1317 Cco11g1312 Clacu11g1455 Cmu11g1277 Cre11g1698 . Cone16ag0385 . . . Csa02g00579 . Cme02g01012 . . . . . . . . Sed11g0509 . Cmo12g00832 . Cma11g00430 . . . Cpe07g00686 Bhi06g01320 Tan08g0778 Cmetu05g0105 . Hepe08g2173 . . Cla06g01441 Cam06g1595 Cec06g1656 Cco06g1649 Clacu06g1558 Cmu06g1512 Cre06g2320 Lsi11g00715 Csa01g01932 Chy02g02167 Cme05g01459
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec07g1203 . 1 754 Nodulin-like Gene Family AT4G19180 60.9 5.4e-249 857.4
Cec11g1652 . 74 334 Nodulin-like Gene Family AT3G45870 70.5 2.3e-99 359.0
Cec09g1993 . 12 371 Nodulin-like Gene Family AT3G28050 58.8 9.5e-114 407.1
Cec09g1993 . 127 333 Nodulin-like Gene Family AT3G28080 50.2 9.5e-51 197.2
Cec10g0259 . 2 335 Nodulin-like Gene Family AT5G47470 61.2 5.0e-105 378.3
Cec01g0410 . 1 338 Nodulin-like Gene Family AT5G47470 57.8 1.9e-101 366.3
Cec09g1993 . 10 333 Nodulin-like Gene Family AT5G40230 54.3 7.2e-93 337.8
Cec09g1993 . 3 333 Nodulin-like Gene Family AT5G40240 52.3 6.7e-91 331.3
Cec10g1459 . 12 335 Nodulin-like Gene Family AT5G40240 50.5 5.1e-83 305.1
Cec05g2047 . 16 274 Nodulin-like Gene Family AT3G53210 60.6 5.1e-85 311.2
Cec08g1510 . 16 282 Nodulin-like Gene Family AT3G53210 57.3 4.3e-84 308.1
Cec04g0983 . 99 360 Nodulin-like Gene Family AT2G37450 59.4 5.3e-82 301.2
Cec07g0356 . 98 332 Nodulin-like Gene Family AT2G37450 57.0 1.1e-68 256.9
Cec07g0357 . 98 334 Nodulin-like Gene Family AT2G37450 55.7 1.3e-67 253.4
Cec11g1619 . 104 336 Nodulin-like Gene Family AT2G37450 54.9 1.7e-64 243.0
Cec09g2113 . 100 333 Nodulin-like Gene Family AT2G37450 50.6 7.5e-60 227.6
Cec04g0983 . 12 338 Nodulin-like Gene Family AT2G37460 67.3 4.4e-122 434.9
Cec07g0357 . 11 334 Nodulin-like Gene Family AT2G37460 57.7 1.9e-101 366.3
Cec07g0356 . 11 332 Nodulin-like Gene Family AT2G37460 57.1 2.6e-98 355.9
Cec11g1619 . 16 343 Nodulin-like Gene Family AT2G37460 54.4 1.4e-96 350.1
Cec08g0581 . 23 350 Nodulin-like Gene Family AT2G37460 50.8 1.0e-94 344.0
Cec09g2113 . 10 333 Nodulin-like Gene Family AT2G37460 55.1 2.8e-92 335.9
Cec09g2115 . 8 331 Nodulin-like Gene Family AT2G37460 52.8 2.8e-92 335.9
Cec04g0647 . 13 362 Nodulin-like Gene Family AT2G37460 50.4 3.1e-91 332.4
Cec10g1660 . 12 342 Nodulin-like Gene Family AT2G37460 52.7 3.2e-88 322.4
Cec08g1510 . 4 395 Nodulin-like Gene Family AT1G75500 72.2 1.4e-160 562.8
Cec05g2047 . 1 388 Nodulin-like Gene Family AT1G75500 73.0 5.9e-154 540.8
Cec06g1656 . 7 333 Nodulin-like Gene Family AT1G75500 62.5 8.3e-116 414.1
Cec05g2741 . 13 366 Nodulin-like Gene Family AT1G60050 51.7 7.7e-95 344.4
Cec07g0357 . 8 361 Nodulin-like Gene Family AT2G39510 59.9 2.2e-118 422.5
Cec07g0356 . 12 341 Nodulin-like Gene Family AT2G39510 61.6 1.7e-113 406.4
Cec04g0983 . 13 345 Nodulin-like Gene Family AT2G39510 60.5 3.5e-111 398.7
Cec09g2115 . 8 343 Nodulin-like Gene Family AT2G39510 56.2 3.6e-108 388.7
Cec09g2113 . 13 334 Nodulin-like Gene Family AT2G39510 58.6 5.3e-104 374.8
Cec11g1619 . 18 335 Nodulin-like Gene Family AT2G39510 57.6 2.0e-98 356.3
Cec04g0647 . 16 339 Nodulin-like Gene Family AT2G39510 51.4 3.0e-91 332.4
Cec10g1660 . 16 349 Nodulin-like Gene Family AT2G39510 50.7 1.2e-90 330.5
Cec11g1365 . 13 350 Nodulin-like Gene Family AT2G39510 50.6 7.5e-90 327.8
Cec08g0581 . 22 277 Nodulin-like Gene Family AT4G08290 63.8 1.2e-87 320.1
Cec11g1619 . 14 263 Nodulin-like Gene Family AT4G08290 53.4 1.7e-73 273.1
Cec11g1619 . 12 355 Nodulin-like Gene Family AT4G08300 67.3 5.5e-125 444.5
Cec08g0581 . 27 376 Nodulin-like Gene Family AT4G08300 51.0 1.9e-93 339.7
Cec04g0983 . 13 332 Nodulin-like Gene Family AT4G08300 50.2 5.5e-85 311.6
Cec02g0082 . 9 260 Nodulin-like Gene Family AT5G64700 60.7 1.3e-77 286.6
Cec04g1253 . 1 236 Nodulin-like Gene Family AT5G64700 52.9 2.6e-60 229.2
Cec11g1317 . 1 368 Nodulin-like Gene Family AT4G30420 53.8 2.5e-104 375.9
Cec11g1365 . 6 336 Nodulin-like Gene Family AT5G07050 72.0 9.4e-139 490.3
Cec10g1660 . 10 342 Nodulin-like Gene Family AT5G07050 68.0 3.7e-127 451.8
Cec04g0647 . 10 339 Nodulin-like Gene Family AT5G07050 64.6 3.0e-121 432.2
Cec11g1619 . 18 336 Nodulin-like Gene Family AT5G07050 52.1 5.4e-94 341.7
Cec09g2115 . 8 331 Nodulin-like Gene Family AT5G07050 50.2 6.0e-85 311.6
Cec04g0647 . 13 357 Nodulin-like Gene Family AT3G56620 58.6 1.2e-106 383.6
Cec11g1365 . 14 338 Nodulin-like Gene Family AT3G56620 56.7 5.2e-99 358.2
Cec05g2741 . 1 372 Nodulin-like Gene Family AT1G70260 55.4 3.4e-106 382.1
Cec02g1558 . 1 332 Nodulin-like Gene Family AT1G09380 58.4 1.0e-110 397.1
Cec01g1112 . 47 355 Nodulin-like Gene Family AT1G09380 62.3 7.5e-106 380.9
Cec04g0647 . 13 352 Nodulin-like Gene Family AT2G40900 60.9 9.0e-110 394.0
Cec10g1660 . 12 347 Nodulin-like Gene Family AT2G40900 55.7 1.3e-105 380.2
Cec11g1365 . 14 333 Nodulin-like Gene Family AT2G40900 57.2 3.8e-100 362.1
Cec06g1656 . 1 351 Nodulin-like Gene Family AT3G18200 68.2 7.1e-128 454.1
Cec08g1510 . 16 360 Nodulin-like Gene Family AT3G18200 57.7 1.1e-107 387.1
Cec05g2047 . 16 354 Nodulin-like Gene Family AT3G18200 54.6 3.7e-100 362.1
Cec11g1619 . 12 355 Nodulin-like Gene Family AT1G44800 64.9 2.3e-123 439.1
Cec08g0581 . 27 369 Nodulin-like Gene Family AT1G44800 51.3 2.6e-95 345.9
Cec04g0647 . 12 339 Nodulin-like Gene Family AT1G44800 50.3 4.1e-88 322.0
Cec11g1652 . 158 428 Nodulin-like Gene Family AT5G45370 68.7 2.2e-102 369.0
Cec11g1619 . 12 313 Nodulin-like Gene Family AT1G21890 65.7 1.1e-114 410.2
Cec08g0581 . 26 327 Nodulin-like Gene Family AT1G21890 50.5 1.5e-87 320.1
Cec10g1660 . 15 318 Nodulin-like Gene Family AT1G21890 52.9 1.8e-85 313.2
Cec04g0983 . 11 311 Nodulin-like Gene Family AT1G21890 50.6 4.5e-81 298.5
Cec07g1352 . 1 565 Nodulin-like Gene Family AT1G80530 59.2 7.6e-187 650.6
Cec07g1222 . 4 417 Nodulin-like Gene Family AT4G19450 66.7 3.7e-146 515.0
Cec06g0065 . 22 420 Nodulin-like Gene Family AT4G19450 58.2 8.2e-130 460.7
Cec06g1845 . 7 538 Nodulin-like Gene Family AT1G74780 58.7 1.1e-179 626.7
Cec06g1846 . 6 520 Nodulin-like Gene Family AT1G74780 56.4 9.5e-163 570.5
Cec06g1847 . 13 422 Nodulin-like Gene Family AT1G74780 56.1 3.2e-126 449.1
Cec02g1240 . 9 540 Nodulin-like Gene Family AT4G34950 70.2 6.2e-221 763.8
Cec02g0442 . 30 535 Nodulin-like Gene Family AT4G34950 66.1 4.9e-202 701.0
Cec11g0736 . 6 592 Nodulin-like Gene Family AT5G14120 68.8 2.5e-233 805.1
Cec02g1240 . 1 386 Nodulin-like Gene Family AT2G16660 70.1 1.6e-151 532.7
Cec02g0442 . 30 389 Nodulin-like Gene Family AT2G16660 68.4 1.1e-139 493.4
Cec05g2349 . 1 584 Nodulin-like Gene Family AT2G39210 67.7 1.4e-226 782.7
Cec08g0813 . 28 603 Nodulin-like Gene Family AT2G39210 62.6 4.0e-210 728.0
Cec05g2351 . 3 564 Nodulin-like Gene Family AT2G39210 63.9 1.5e-201 699.5
Cec10g2008 . 1 579 Nodulin-like Gene Family AT2G39210 59.1 3.1e-194 675.2
Cec03g0262 . 19 575 Nodulin-like Gene Family AT2G39210 59.8 1.9e-188 656.0
Cec04g1084 . 18 579 Nodulin-like Gene Family AT2G39210 56.5 7.1e-183 637.5
Cec05g2350 . 15 494 Nodulin-like Gene Family AT2G39210 59.7 2.3e-165 579.3
Cec03g0251 . 16 557 Nodulin-like Gene Family AT2G39210 51.3 1.5e-153 540.0
Cec04g0337 . 12 526 Nodulin-like Gene Family AT2G39210 52.0 2.2e-152 536.2
Cec10g2011 . 1 275 Nodulin-like Gene Family AT2G39210 58.9 3.9e-88 322.8
Cec03g0253 . 48 289 Nodulin-like Gene Family AT2G39210 52.8 1.2e-68 258.1
Cec04g0248 . 12 154 Nodulin-like Gene Family AT2G39210 60.1 6.7e-48 189.1
Cec07g1222 . 7 565 Nodulin-like Gene Family AT3G01630 52.8 2.7e-147 519.2
Cec06g0065 . 28 567 Nodulin-like Gene Family AT3G01630 50.4 8.3e-141 497.7
Cec11g0736 . 6 429 Nodulin-like Gene Family AT3G01930 69.2 1.5e-166 582.8
Cec06g1845 . 10 537 Nodulin-like Gene Family AT1G18940 54.9 1.4e-166 583.2
Cec06g1846 . 3 511 Nodulin-like Gene Family AT1G18940 54.1 2.3e-153 539.3
Cec06g1847 . 7 422 Nodulin-like Gene Family AT1G18940 52.6 1.3e-119 427.2
Cec06g1845 . 6 539 Nodulin-like Gene Family AT2G34350 56.0 7.4e-160 560.8
Cec06g1846 . 8 522 Nodulin-like Gene Family AT2G34350 54.2 4.1e-150 528.5
Cec06g1847 . 11 422 Nodulin-like Gene Family AT2G34350 52.6 8.5e-116 414.5
Cec03g0262 . 15 569 Nodulin-like Gene Family AT2G28120 70.3 3.0e-223 771.5
Cec05g2349 . 10 569 Nodulin-like Gene Family AT2G28120 61.8 2.2e-197 685.6
Cec08g0813 . 24 588 Nodulin-like Gene Family AT2G28120 58.9 1.7e-186 649.4
Cec10g2008 . 19 555 Nodulin-like Gene Family AT2G28120 60.7 2.2e-181 632.5
Cec03g0251 . 13 561 Nodulin-like Gene Family AT2G28120 57.4 1.3e-178 623.2
Cec05g2351 . 9 563 Nodulin-like Gene Family AT2G28120 57.4 3.1e-175 612.1
Cec04g1084 . 16 573 Nodulin-like Gene Family AT2G28120 56.0 2.1e-171 599.4
Cec03g0259 . 8 581 Nodulin-like Gene Family AT2G28120 53.7 4.7e-168 588.2
Cec03g0257 . 2 544 Nodulin-like Gene Family AT2G28120 51.4 1.5e-161 566.6
Cec03g0258 . 3 548 Nodulin-like Gene Family AT2G28120 50.5 1.5e-153 540.0
Cec04g0337 . 1 529 Nodulin-like Gene Family AT2G28120 51.5 2.2e-149 526.2
Cec05g2350 . 17 515 Nodulin-like Gene Family AT2G28120 51.0 6.5e-141 498.0
Cec10g2011 . 17 280 Nodulin-like Gene Family AT2G28120 59.1 5.2e-82 302.4
Cec04g0248 . 1 154 Nodulin-like Gene Family AT2G28120 53.9 1.7e-45 181.0
Cec07g1222 . 4 570 Nodulin-like Gene Family AT1G31470 57.1 3.4e-166 582.0
Cec06g0065 . 28 574 Nodulin-like Gene Family AT1G31470 56.1 3.9e-162 568.5
Cec09g0958 . 27 216 Nodulin-like Gene Family AT1G76800 76.3 7.0e-71 263.8
Cec08g0723 . 17 215 Nodulin-like Gene Family AT1G76800 69.8 5.0e-69 257.7
Cec09g1527 . 8 202 Nodulin-like Gene Family AT1G76800 62.1 5.5e-60 227.6
Cec09g1527 . 9 202 Nodulin-like Gene Family AT3G25190 66.3 2.4e-64 242.3
Cec08g0723 . 23 215 Nodulin-like Gene Family AT3G25190 63.2 7.3e-61 230.7
Cec09g0958 . 34 216 Nodulin-like Gene Family AT3G25190 63.7 9.9e-58 220.3
Cec08g0723 . 20 215 Nodulin-like Gene Family AT1G21140 75.5 5.8e-73 270.8
Cec09g0958 . 29 216 Nodulin-like Gene Family AT1G21140 73.9 6.0e-70 260.8
Cec09g1527 . 7 202 Nodulin-like Gene Family AT1G21140 61.7 1.1e-63 240.0
Cec08g0723 . 20 212 Nodulin-like Gene Family AT3G43630 77.2 2.9e-72 268.5
Cec09g0958 . 29 213 Nodulin-like Gene Family AT3G43630 73.5 1.1e-68 256.5
Cec09g1527 . 7 199 Nodulin-like Gene Family AT3G43630 61.7 1.9e-60 229.2
Cec08g0723 . 20 215 Nodulin-like Gene Family AT3G43660 74.0 6.4e-72 267.3
Cec09g0958 . 25 216 Nodulin-like Gene Family AT3G43660 70.8 6.0e-70 260.8
Cec09g1527 . 7 202 Nodulin-like Gene Family AT3G43660 61.2 1.2e-62 236.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002385 0 3 0 0 0 1 3 1 1 0 1 1 3 1 1 3 1 2 3 1 1 4 3 5 4 1 2 7 5 1 59