Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1393 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCAGCAGCAGCATCATCATCATCATCAACTCCACCATCAAAACCAAAACCAAAAACGTGGTTCTTCTCAATCACAATCTCAATCTCCATCACCATCTCCATCTCCATCTCCTCAGCAGCACCTTCATGGAGTTCCTTTCGATGGCAGATCACCAGTTTCGGCGGCAGAAGCAGGAGGAGGAGGAGGAGGAGGAGGAGCTCCACCTTTCATGGCTTCCATCTCCTCTCTTGTCTCCCTCCCTCCTCCTTCTTCTTCCAATTCTTCTGTTTCCTCCGCCTCTAACGTCGCCGCCCCTCCTCCCCACCTCGACGCTACACTCGTCATCGCCACCCGATCCGACACCACCACCACCACCACCGATCCTTCTCCCCGATCTGCTTCCAACAATAACGCTCTCAAGCGTTCCACCAAAGATCGCCACACTAAAGTCGACGGTCGTGGCCGTCGTATACGTATGCCGGCCACTTGTGCCGCTAGGGTTTTCCAGTTGACTCGTGAATTAGGCCATAAGTCAGACGGCGAAACCATCGAGTGGCTTCTCCAGCAAGCCGAACCTGCCATCATCGCCGCTACTGGCACCGGTACAATCCCTGCTAATTTCTCCTCCTTAAATATCTCAATTCGTAGCAGTGGATCCACTCTCTCTGCTCCTCCCTCCAAATCCGCTCCCCATTCCTTTCATGGCGCTCTGGCTCTCGCTCACCATCCCCACGCCTATGATGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCAGCACCAGCAACAGCAACAACAGCAACACCAACTCAATTTAATGACCGCCGATCAAATCGGCGACACTCTCCCGACCGGCGGCGGCGGAGGAGATTCAACCGATAACTATATGAGAAAACGATTTAGAGAAGACCTGTTTAAAGAAGATACACAATCTCCAGGAGAGAGCAGTGGCGGCGCTGGATCTCCGAAAGCAATGAAGAGCGATCTGCAATTAGAGAAACAACAACCACCATCAGCTTCTTCGTCGGGGCTACTGCGGCCTGGGGCGGCGATGTGGGCGGTGGCGGCTCCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACGACAGGTTCAGGCGGAGGAAATGTAGGGAGTTCTTCTGGCGGCGGCGGCGTTGGGGGAATGGAAGCTCATCAGATGTGGCCATTTTCGACAAGTGGAAACACATTACAGGCGCCGTTGCATTTGATGCCAAGATTCAACATCCCGGAAATTCAAGCGGCGGCGGCGGCAGCAGCAGGAGGACGAGGCGGCGGGCAATTGCAACTGGGTTCGATGTTGATGCAACAAGGTGGCGGAGGAGGCGGTGGTTTGGGAGTAACGGAATCGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTACTCTAGAGGCGGTGGTTTCAATATTAATTCTGATCATAATCATCCATTGGAGAATCATCCTCACACTCATACTACTGATAGTGGAGATGAAGCTCCAAACACTTCACAATGA 1554 53.02 MELTDMQQSNKQQQQQQHHHHHQLHHQNQNQKRGSSQSQSQSPSPSPSPSPQQHLHGVPFDGRSPVSAAEAGGGGGGGGAPPFMASISSLVSLPPPSSSNSSVSSASNVAAPPPHLDATLVIATRSDTTTTTTDPSPRSASNNNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHAYDEGFAHAALLGFHQHQQQQQQQHQLNLMTADQIGDTLPTGGGGGDSTDNYMRKRFREDLFKEDTQSPGESSGGAGSPKAMKSDLQLEKQQPPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTTGSGGGNVGSSSGGGGVGGMEAHQMWPFSTSGNTLQAPLHLMPRFNIPEIQAAAAAAAGGRGGGQLQLGSMLMQQGGGGGGGLGVTESNLGMLAALNAAYSRGGGFNINSDHNHPLENHPHTHTTDSGDEAPNTSQ 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28166933 28168486 - CePI673135_11g013930.1 Cec11g1393 216605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1393 517 ProSiteProfiles TCP domain profile. 150 204 IPR017887 -
Cec11g1393 517 MobiDBLite consensus disorder prediction 126 162 - -
Cec11g1393 517 MobiDBLite consensus disorder prediction 126 146 - -
Cec11g1393 517 MobiDBLite consensus disorder prediction 489 517 - -
Cec11g1393 517 MobiDBLite consensus disorder prediction 1 113 - -
Cec11g1393 517 Pfam TCP family transcription factor 149 277 IPR017887 -
Cec11g1393 517 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 102 482 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cec11g1393 517 MobiDBLite consensus disorder prediction 29 43 - -
Cec11g1393 517 MobiDBLite consensus disorder prediction 312 352 - -
Cec11g1393 517 MobiDBLite consensus disorder prediction 147 162 - -
Cec11g1393 517 MobiDBLite consensus disorder prediction 90 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1393 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1783 Cec-Chr1:32310893 Cec11g1393 Cec-Chr11:28166933 4.40E-34 dispersed
Cec02g1490 Cec-Chr2:32438782 Cec11g1393 Cec-Chr11:28166933 8.60E-29 dispersed
Cec06g0201 Cec-Chr6:2083440 Cec11g1393 Cec-Chr11:28166933 2.30E-27 dispersed
Cec06g1822 Cec-Chr6:31656827 Cec11g1393 Cec-Chr11:28166933 2.10E-37 dispersed
Cec11g1393 Cec-Chr11:28166933 Cec05g2670 Cec-Chr5:37290645 9.20E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec01g0828 . 48 262 TCP Transcription Factor Family AT5G23280 63.1 6.0e-67 251.1
Cec02g1490 . 37 257 TCP Transcription Factor Family AT5G23280 59.4 1.2e-59 226.9
Cec06g0019 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 3.8e-67 252.3
Cec05g2670 . 66 160 TCP Transcription Factor Family AT3G47620 89.7 8.4e-41 165.2
Cec01g1783 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cec11g1393 . 149 231 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cec11g1393 . 149 241 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Cec05g1534 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.0e-60 229.2
Cec06g0201 . 26 257 TCP Transcription Factor Family AT3G27010 51.0 6.2e-53 204.9
Cec02g1490 . 9 255 TCP Transcription Factor Family AT5G08330 56.3 1.3e-63 240.0
Cec01g0828 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.5e-63 237.3
Cec11g1393 . 148 389 TCP Transcription Factor Family AT1G35560 50.4 1.6e-43 173.7
Cec07g1766 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30552 PF03634 TCP 6.50E-39 No_clan Cec TF