Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1393 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCAGCAGCAGCATCATCATCATCATCAACTCCACCATCAAAACCAAAACCAAAAACGTGGTTCTTCTCAATCACAATCTCAATCTCCATCACCATCTCCATCTCCATCTCCTCAGCAGCACCTTCATGGAGTTCCTTTCGATGGCAGATCACCAGTTTCGGCGGCAGAAGCAGGAGGAGGAGGAGGAGGAGGAGGAGCTCCACCTTTCATGGCTTCCATCTCCTCTCTTGTCTCCCTCCCTCCTCCTTCTTCTTCCAATTCTTCTGTTTCCTCCGCCTCTAACGTCGCCGCCCCTCCTCCCCACCTCGACGCTACACTCGTCATCGCCACCCGATCCGACACCACCACCACCACCACCGATCCTTCTCCCCGATCTGCTTCCAACAATAACGCTCTCAAGCGTTCCACCAAAGATCGCCACACTAAAGTCGACGGTCGTGGCCGTCGTATACGTATGCCGGCCACTTGTGCCGCTAGGGTTTTCCAGTTGACTCGTGAATTAGGCCATAAGTCAGACGGCGAAACCATCGAGTGGCTTCTCCAGCAAGCCGAACCTGCCATCATCGCCGCTACTGGCACCGGTACAATCCCTGCTAATTTCTCCTCCTTAAATATCTCAATTCGTAGCAGTGGATCCACTCTCTCTGCTCCTCCCTCCAAATCCGCTCCCCATTCCTTTCATGGCGCTCTGGCTCTCGCTCACCATCCCCACGCCTATGATGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCAGCACCAGCAACAGCAACAACAGCAACACCAACTCAATTTAATGACCGCCGATCAAATCGGCGACACTCTCCCGACCGGCGGCGGCGGAGGAGATTCAACCGATAACTATATGAGAAAACGATTTAGAGAAGACCTGTTTAAAGAAGATACACAATCTCCAGGAGAGAGCAGTGGCGGCGCTGGATCTCCGAAAGCAATGAAGAGCGATCTGCAATTAGAGAAACAACAACCACCATCAGCTTCTTCGTCGGGGCTACTGCGGCCTGGGGCGGCGATGTGGGCGGTGGCGGCTCCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACGACAGGTTCAGGCGGAGGAAATGTAGGGAGTTCTTCTGGCGGCGGCGGCGTTGGGGGAATGGAAGCTCATCAGATGTGGCCATTTTCGACAAGTGGAAACACATTACAGGCGCCGTTGCATTTGATGCCAAGATTCAACATCCCGGAAATTCAAGCGGCGGCGGCGGCAGCAGCAGGAGGACGAGGCGGCGGGCAATTGCAACTGGGTTCGATGTTGATGCAACAAGGTGGCGGAGGAGGCGGTGGTTTGGGAGTAACGGAATCGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTACTCTAGAGGCGGTGGTTTCAATATTAATTCTGATCATAATCATCCATTGGAGAATCATCCTCACACTCATACTACTGATAGTGGAGATGAAGCTCCAAACACTTCACAATGA 1554 53.02 MELTDMQQSNKQQQQQQHHHHHQLHHQNQNQKRGSSQSQSQSPSPSPSPSPQQHLHGVPFDGRSPVSAAEAGGGGGGGGAPPFMASISSLVSLPPPSSSNSSVSSASNVAAPPPHLDATLVIATRSDTTTTTTDPSPRSASNNNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHAYDEGFAHAALLGFHQHQQQQQQQHQLNLMTADQIGDTLPTGGGGGDSTDNYMRKRFREDLFKEDTQSPGESSGGAGSPKAMKSDLQLEKQQPPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTTGSGGGNVGSSSGGGGVGGMEAHQMWPFSTSGNTLQAPLHLMPRFNIPEIQAAAAAAAGGRGGGQLQLGSMLMQQGGGGGGGLGVTESNLGMLAALNAAYSRGGGFNINSDHNHPLENHPHTHTTDSGDEAPNTSQ 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28166933 28168486 - CePI673135_11g013930.1 Cec11g1393 216605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1393 517 ProSiteProfiles TCP domain profile. 150 204 IPR017887 -
Cec11g1393 517 MobiDBLite consensus disorder prediction 126 162 - -
Cec11g1393 517 MobiDBLite consensus disorder prediction 126 146 - -
Cec11g1393 517 MobiDBLite consensus disorder prediction 489 517 - -
Cec11g1393 517 MobiDBLite consensus disorder prediction 1 113 - -
Cec11g1393 517 Pfam TCP family transcription factor 149 277 IPR017887 -
Cec11g1393 517 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 102 482 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cec11g1393 517 MobiDBLite consensus disorder prediction 29 43 - -
Cec11g1393 517 MobiDBLite consensus disorder prediction 312 352 - -
Cec11g1393 517 MobiDBLite consensus disorder prediction 147 162 - -
Cec11g1393 517 MobiDBLite consensus disorder prediction 90 109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1783 Cec-Chr1:32310893 Cec11g1393 Cec-Chr11:28166933 4.40E-34 dispersed
Cec02g1490 Cec-Chr2:32438782 Cec11g1393 Cec-Chr11:28166933 8.60E-29 dispersed
Cec06g0201 Cec-Chr6:2083440 Cec11g1393 Cec-Chr11:28166933 2.30E-27 dispersed
Cec06g1822 Cec-Chr6:31656827 Cec11g1393 Cec-Chr11:28166933 2.10E-37 dispersed
Cec11g1393 Cec-Chr11:28166933 Cec05g2670 Cec-Chr5:37290645 9.20E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30552 PF03634 TCP 6.50E-39 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1393 - - - 0.0