Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1417 ATGGCTTCCGCTTGTGCTTCTTCCGCCATTGCGGCTGTGGCAATCTCTTCATCCAGTTCCCAGAAGAATGGGTGCCCCAAGGCTTCTAATTTCCTTACCGGCAAGAAGCTGAGGCTGAGAAACTTAACTGCCGCGGCTGCTGTTGCTCCTCGATCAGCTCCGGTATGCGCCGCAGCTGACCCCGACAGACCTCTCTGGTTCCCTGGCAGCACCCCTCCTCCATGGCTCGACGGCAGCCTTCCCGGCGACTTTGGCTTTGACCCACTTGGTCTTGCGTCTGATCCGGAGAGTCTGAGATGGAACCAGCAGGCGGAGCTGGTACACTGCCGATGGGCAATGTTGGGGGCGGCCGGAATTTTCATCCCGGAATTTTTGACAAAGATCGGAATATTGAACACTCCGTCGTGGTACACCGCCGGTGAATTGGAATACTTCACCGACACCACCACTCTGTTCATAGTGGAACTCATTTTCATTGGTTGGGCCGAGGGTAGACGGTGGGCCGACATCCTCAAACCCGGCTGCGTCAACACCGACCCGATTTTCCCTAACAACAAGCTCACCGGAACCGACGTCGGATACCCGGGTGGGCTTTGGTTCGACCCGCTCGGGTGGGGAAGCGGGTCACCCGAAAAGATCAAGGAATTGAGAACGAAAGAGATAAAGAACGGGCGATTGGCTATGTTGGCGGTGATGGGAGCTTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTCTTCGCTCACCTTGCCGATCCCGGCCACGCCACCGTCTTCGCCGCTTTCACACCAAAGTGA 807 56.75 MASACASSAIAAVAISSSSSQKNGCPKASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28360103 28362412 - CePI673135_11g014170.1 Cec11g1417 216629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1417 268 FunFam Chlorophyll a-b binding protein, chloroplastic 73 258 - -
Cec11g1417 268 Pfam Chlorophyll A-B binding protein 72 238 IPR022796 -
Cec11g1417 268 SUPERFAMILY Chlorophyll a-b binding protein 59 266 - -
Cec11g1417 268 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 12 263 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cec11g1417 268 Gene3D Chlorophyll a/b binding protein domain 73 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1759 Cec-Chr1:32146271 Cec11g1417 Cec-Chr11:28360103 3.30E-48 dispersed
Cec03g1553 Cec-Chr3:33686161 Cec11g1417 Cec-Chr11:28360103 8.50E-88 dispersed
Cec08g1644 Cec-Chr8:27790748 Cec11g1417 Cec-Chr11:28360103 4.10E-50 dispersed
Cec09g2164 Cec-Chr9:38567499 Cec11g1417 Cec-Chr11:28360103 6.30E-37 dispersed
Cec10g2202 Cec-Chr10:36452102 Cec11g1417 Cec-Chr11:28360103 8.20E-28 dispersed
Cec11g1417 Cec-Chr11:28360103 Cec11g1955 Cec-Chr11:33598804 2.50E-23 dispersed
Cec11g1417 Cec-Chr11:28360103 Cec06g1811 Cec-Chr6:31568582 1.60E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1417 K08908 - csv:101214055 517.694