Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1418 ATGAGAACTCGAACAGGCTTATCTTACCCTCAACTTCAACCAAACACCTTCTCTTCCGACAACCGTCATCGGAAGAGAACACATCATGCCGCTGCCGACCGCCCCTTTTGCCGGAAAAGGAACAAGCTCTCTTCCGACATCAAAACACCCATCTCCGATTTGTTCGATTCCTTGCCGGATGACCTCGTCATTTCTATTCTCTCTAATCTCAGCTCTGCCGCTTCTTCCCCCTCCGATTTCATCAATATCTTGCTAACATGCAAAAGATTGAACTGTTTAGGACTTAATCCGATGGTATTATCAAGAGCTTCTCAGAAGACTTTCGCAATTAGGGCACGAAACTGGACGGAATCCGCTCACCGGTTTCTGAAACAGTGTTCCGATGCCGGGAATGTCGAGGCCTGTTATACACTTGGCATGATTCGTTTCTACTGTTTGCAAAATCGGGGTAGCGGAGCTTCGTTGATGGCGAAGGCGGCGATTTGTTCTCACGCGCCGGCTCTTTACTCCCTGGCCGTTATTCAGTTCAACGGCAGCGGCGGATCAAAGAACGATAAGGACCTCCGCGCCGGAGTTGCGCTTTGCGCTCGTGCGGCGTTTCTCGGCCACATCGACGCCCTTAGAGAACTTGGTCATTGCCTTCAAGACGGTTACGGCGTTCGTCAGAACATAACGGAGGGTCGTCGGTTTCTTGTTCAGGCTAACGCGCGTGAACTCGCGGCCGTGCTGTCTTCGGAGGCGGCTTCTTCCGTTGTCGCATCGCGCTCGTGCCTCACGTGGAACCCTCACCCTTCTCACCACCGGCACGTTACGGGCTCGGGATGTCCGTTGTTAAGCGATTTCGGTTGTAATATCCCGGCGCCGGTGGCTCATCCGGCGAGTCAGTTTTTGGCTGAGTGGTTCGAGGCACGTGGGGGGTCGCCTGGGCATGGTCTGAGGCTGTGTTCGCACGTGGGGTGTGGACGTCCGGAGACCAGACGGCATGAGTTTCGTCGGTGTTCCGTTTGTGGTGCCGTTAACTACTGCTCACGTGCATGTCAGGCGCTGGATTGGAAACTCCGCCACAAGATGGATTGTGCTCCGGTGGAACGTTGGCTTGATGATAACGGTGACGGTGGGGCCGATGTGGCCGATGATATCATGGACGAAAGTTAA 1155 54.2 MRTRTGLSYPQLQPNTFSSDNRHRKRTHHAAADRPFCRKRNKLSSDIKTPISDLFDSLPDDLVISILSNLSSAASSPSDFINILLTCKRLNCLGLNPMVLSRASQKTFAIRARNWTESAHRFLKQCSDAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARELAAVLSSEAASSVVASRSCLTWNPHPSHHRHVTGSGCPLLSDFGCNIPAPVAHPASQFLAEWFEARGGSPGHGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKMDCAPVERWLDDNGDGGADVADDIMDES 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28385257 28386643 + CePI673135_11g014180.1 Cec11g1418 216630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1418 384 Pfam MYND finger 320 359 IPR002893 -
Cec11g1418 384 FunFam Predicted protein 307 364 - -
Cec11g1418 384 SUPERFAMILY HCP-like 114 234 - -
Cec11g1418 384 SUPERFAMILY HIT/MYND zinc finger-like 313 364 - -
Cec11g1418 384 Gene3D - 308 363 - -
Cec11g1418 384 MobiDBLite consensus disorder prediction 1 33 - -
Cec11g1418 384 MobiDBLite consensus disorder prediction 1 18 - -
Cec11g1418 384 Gene3D Tetratricopeptide repeat domain 99 253 IPR011990 GO:0005515(InterPro)
Cec11g1418 384 PANTHER MYND DOMAIN-CONTAINING 35 373 IPR044508 -
Cec11g1418 384 ProSiteProfiles Zinc finger MYND-type profile. 317 359 IPR002893 -
Cec11g1418 384 SUPERFAMILY F-box domain 52 111 IPR036047 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1418 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0359 Cec-Chr3:4016585 Cec11g1418 Cec-Chr11:28385257 2.50E-127 dispersed
Cec06g1981 Cec-Chr6:33086953 Cec11g1418 Cec-Chr11:28385257 9.90E-127 dispersed
Cec11g1418 Cec-Chr11:28385257 Cec08g1773 Cec-Chr8:28830059 7.80E-151 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1251 . . . . . Bpe10g00767 . Bma15g00254 . Cmo18g00682 . Cma18g00695 . Car18g00645 . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00813 . . . . . . . . . . . . . . . . . . . . . . . Cla11g01338 Cam11g1396 Cec11g1418 Cco11g1415 . . Cre11g1794 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002511 1 2 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 60