Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1438 ATGGATGTTCCCGAGGTTGAAGAAATATTTTTTGCTGCCGGTGATGCCAAGTTGCATGGAGAAATGTTCAAGAAACTCGCTGCAATTTATGGCCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCACGACCTAGAAGCAAAACTGGTATCCGGGCTTTATGTTCATTACATGTAGCTCTTGAGAAGGCTAAGAATACTCTTCAGCATTGCTCAGAATCCAGTAAACTCTACTTGGCTATAACTGGAGATGCTGTTCTAGCCAAATTTGAAAAGGCAAGATGTTCTCTTGAAGTTAGTCTTATATGCGTTGAAGATATTGTTTCACAATCAATTGGATTTCAGATTCAGCAGATAGTGAACGAACTCAAGAACACTGTTTTCTTACTTGATCCCCTTGAGAAACAAATTGGTGATGATATCATTGCATTACTCTTGCAAGAAAGAAAATTTGATGATTCCAATGGCCATAATGAGCTGGAGCATTTTCATCAGGCTGCCACGAAACTTGGAATTACCTCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTCAAGAGAATTGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTACCTTTTGCATCTGATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGTTGGCAGATGACGCCGATTCACAGGGTGGGTCAACTCCTTGTTCTCCTACTCTTCGGTGTTCTCTCGAGGACAATGGACTTGCAGCGAATGGTAAAGTTTTTGAACATCAGCTTTCAAAGCTTAGTTCTTTTAATTTCAAGCCAAATTATAGGATATCAGGGCAGATGCCTCTTCCACCTGAGGAATTAAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTTATAATTGATTCTGGACAAACATATGAAAGGATCTGTATAGAGAAGTGGTTCAGTGATGGTCATAAAACCTGCCCAAAGACTCAACAGAAGCTCTCGCACCTGTCCTTGACACCTAATTACTCTGTCAAGGGTCTCATTGCTAATTGGTGTGAACATAACGGAGTTCCTATCCTGGATGGTCCACCAAAATCACTTGATCTGAATTATTGGAGGCTTGCATTGTCTGATTCTGAGTCTGGAAAATCAAAATCTGTGGACAATGTTGGCTCTCACACGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAGGAAAGTGGAACAATTAAGGTTGCTGAAGAAAATGAAGCAGATGATAATACATACATGGAGGAGTCAGCTGATTTTATTACACTGGAGAGTTGTGTAAATTTTATGGCAGTATTGACTGAAGAGGGAGACTTGAGAAAAAAATGTAAGGTTGTGGAGCAGATAAGACTTTCATTGAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAATGCTGATGCTCAGGAAACTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAACAGGGAAATGATGATAGCGGCAGGTGTAATCTCGTTGTTGGAGAACATGATTTTGAAATCGAATTTACATGGACCTGCAACAGCCCTATATTTGAACCTTTCCTGCCTAGAAGATGCCAAACCTATCATTAGTTCGAGTACAGCCGTTCCTTTCCTGATCCAGCTGCTTACTTGTAATGGTGAATCCCAAACCAAGCTCGATGCGCTTCATACCCTTTATAACCTTTCAACCACGCCGTCCATCATTCCTGTTCTTCTTTCCGCTGGTATTGTCTGTGGACTTCAATCCTTTATTGCAGCTCCTAGCGACAGCATGTGGACAGAGACTTCTTTAGCTATCTTAATGAACTTAGCTTCAAGCCAGTTAGGGATAGAAGAAATAACTTCAGCTCCAGAGCTTATCAGTGGGTTGGCAGCAATCGTGGATGCTGGCGAACGTGCCGAGCAGGAGCAAGCTGTATCATGTTTGTTGATTTTGTGTAGAGGGAGTGAAAAATGCAGTCAAATGGTCTTACAGGAAGGAGTGATTCCGGGATTGGTGGCGATTACGGTAAATGGAACTTCAAGAGGGAAAGTAAAAGCTCAAAAACTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAAGATACTGATATCATTCAGCAGCGAGACGGAAATAGCGACACGGCCATGGCTGCTCCAGATTCTAAGCCACTTTGCAAATCAATGTCAAAGAAAAAGATGGGGAAAGCACTAAGCTTTTTTGCGAGGAGCAAACGATTTTCACTATACCAATGTTGA 2304 41.8 MDVPEVEEIFFAAGDAKLHGEMFKKLAAIYGQVMSIFPSLEAARPRSKTGIRALCSLHVALEKAKNTLQHCSESSKLYLAITGDAVLAKFEKARCSLEVSLICVEDIVSQSIGFQIQQIVNELKNTVFLLDPLEKQIGDDIIALLLQERKFDDSNGHNELEHFHQAATKLGITSSKAALTERRALKRIVERARLEEDKRKESIVAYLLHLMRKYSKLFRSELADDADSQGGSTPCSPTLRCSLEDNGLAANGKVFEHQLSKLSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQQKLSHLSLTPNYSVKGLIANWCEHNGVPILDGPPKSLDLNYWRLALSDSESGKSKSVDNVGSHTLKEVKVVPLEESGTIKVAEENEADDNTYMEESADFITLESCVNFMAVLTEEGDLRKKCKVVEQIRLSLKDDDEARILMGANGFAEALMEFLTLALIEENADAQETGAMALFNLSVNNNRNREMMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIISSSTAVPFLIQLLTCNGESQTKLDALHTLYNLSTTPSIIPVLLSAGIVCGLQSFIAAPSDSMWTETSLAILMNLASSQLGIEEITSAPELISGLAAIVDAGERAEQEQAVSCLLILCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKVKAQKLLMLFREQRQKDTDIIQQRDGNSDTAMAAPDSKPLCKSMSKKKMGKALSFFARSKRFSLYQC 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28553272 28557258 + CePI673135_11g014380.1 Cec11g1438 216650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1438 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Cec11g1438 767 PANTHER U BOX DOMAIN-CONTAINING 22 714 - -
Cec11g1438 767 Gene3D - 428 532 IPR011989 -
Cec11g1438 767 Gene3D - 546 716 IPR011989 -
Cec11g1438 767 Pfam U-box domain 281 350 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec11g1438 767 SUPERFAMILY RING/U-box 274 355 - -
Cec11g1438 767 CDD RING-Ubox_PUB 281 333 IPR045210 -
Cec11g1438 767 SMART Ubox_2 283 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec11g1438 767 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Cec11g1438 767 SUPERFAMILY ARM repeat 440 697 IPR016024 -
Cec11g1438 767 SMART arm_5 545 586 IPR000225 GO:0005515(InterPro)
Cec11g1438 767 SMART arm_5 506 544 IPR000225 GO:0005515(InterPro)
Cec11g1438 767 SMART arm_5 460 504 IPR000225 GO:0005515(InterPro)
Cec11g1438 767 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1869 Cec-Chr6:32030403 Cec11g1438 Cec-Chr11:28553272 2.60E-11 dispersed
Cec08g0964 Cec-Chr8:21465409 Cec11g1438 Cec-Chr11:28553272 3.60E-15 dispersed
Cec08g1778 Cec-Chr8:28885638 Cec11g1438 Cec-Chr11:28553272 1.50E-278 dispersed
Cec10g1844 Cec-Chr10:33283467 Cec11g1438 Cec-Chr11:28553272 5.70E-11 dispersed
Cec11g0628 Cec-Chr11:6917208 Cec11g1438 Cec-Chr11:28553272 2.20E-34 dispersed
Cec11g1438 Cec-Chr11:28553272 Cec03g0157 Cec-Chr3:1536262 4.40E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1438 - - - 0.0