Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1439 ATGGTTCTCATTATCGAAGAAAACAACGGAATCGTCATTAATGAGCTTTACAGAGCATCCGAAACTTACCTCTCTACAAAAATCTCTCCATCGCTGAACCATCTCAAGGCTTCCAAGGCTCCAGGAGAAACCAATGTAACCTACAAAATCAACAAAGGCGATGTACTAATCGACGTATTCGAAGGAATCCAAATCGCCTGGGAATTGATTTCCACAGAAAAACAGAGCACTTATTTCGATTTCGAAATCTCTACTCAAACATCCGAAACAATTGAAAAACGACATTACCAAATCAGTTTCAACAAGAAACACAAAGATTTGGTAATGAAAATTTACGTTCCGTTTATTCTGAACAGAGCAAAAGTCATAGAGGAAGAAAACAGAGTGGTGAAGCTTTATGCGTTAATGGGGGGATATGGGAATGGGGATTCGATTGTTTTGCAGAACAGTTGTAGTTTTGGGAATTTGGCTATGGATGAGAAGAAGAAGAGGGAATTGATGGAGGATTTGGATAGATTTGTGAGGAGAAGGGAATTTTATAGGAGGATTGGGAAGGCTTGGAAAAGAGGGTATCTTCTTTATGGGCCGCCGGGAACAGGGAAATCGAGCTTGGTGGCGGCCATGGCGGATTATTTGAAGTTTAATATTTATGATTTGGAGCTTAGCAGTGTTCACTCAAACTCGGCGCTTAGAACGATGCTGTTGTCCACTGCTGATAGGTCCATTATTGTGATTGAGGATATTGACTGCAGCGCTGAGCTGAAGGACCGTACAAATGGCGGACATGACGGCGGTGACAGCCAGTTGACTTTGTCTGGAGTGTTGAACGTCATAGATGGGTTATGGTCAAGTTGTGGAGATGCAAGAATAATAGTTTTCACAACAAACCATAAGGAAAGATTGGACCCCGCATTGTTAAGACCCGGGCGCATGGATATGCACGTCCACATGACTTATTTGACTCCTTATGGATTTGAAATTCTAGCCTCTAACTATTTGCAAATCAATCACCACCAACGTTTCAAAGAAATTCAAGACCTTATAATAGAGGTGGATGTCACACCTGCAGAAATTGCAGGGGAGCTCATGAAAAGTGACGATGCTGACATGGCACTTGAATCTGTCGTTGAATTCGTCAACGGAAAGAAGAAGAAGAAGATGGAGAAAGAGTGTAATTCTGACGTGATCGAAAATGTTGGTTGCCATAGCCCCCAAGACAATGAGGATCAAGAAGATCTAAAGGAGAGAAAGAAATATAAACGAAGGCGAAACAGATAG 1278 41.86 MVLIIEENNGIVINELYRASETYLSTKISPSLNHLKASKAPGETNVTYKINKGDVLIDVFEGIQIAWELISTEKQSTYFDFEISTQTSETIEKRHYQISFNKKHKDLVMKIYVPFILNRAKVIEEENRVVKLYALMGGYGNGDSIVLQNSCSFGNLAMDEKKKRELMEDLDRFVRRREFYRRIGKAWKRGYLLYGPPGTGKSSLVAAMADYLKFNIYDLELSSVHSNSALRTMLLSTADRSIIVIEDIDCSAELKDRTNGGHDGGDSQLTLSGVLNVIDGLWSSCGDARIIVFTTNHKERLDPALLRPGRMDMHVHMTYLTPYGFEILASNYLQINHHQRFKEIQDLIIEVDVTPAEIAGELMKSDDADMALESVVEFVNGKKKKKMEKECNSDVIENVGCHSPQDNEDQEDLKERKKYKRRRNR 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28558928 28561691 - CePI673135_11g014390.1 Cec11g1439 216651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1439 425 Pfam ATPase family associated with various cellular activities (AAA) 191 318 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cec11g1439 425 ProSitePatterns AAA-protein family signature. 289 307 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cec11g1439 425 PANTHER BCS1 AAA-TYPE ATPASE 5 385 IPR050747 -
Cec11g1439 425 SMART AAA_5 187 321 IPR003593 GO:0016887(InterPro)
Cec11g1439 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 365 IPR027417 -
Cec11g1439 425 CDD RecA-like_BCS1 166 317 - -
Cec11g1439 425 Gene3D - 144 315 IPR027417 -
Cec11g1439 425 Gene3D - 316 385 - -
Cec11g1439 425 Pfam Domain associated at C-terminal with AAA 3 70 IPR025753 -
Cec11g1439 425 MobiDBLite consensus disorder prediction 397 425 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1439 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g1489 Cec-Chr10:29263779 Cec11g1439 Cec-Chr11:28558928 3.50E-72 dispersed
Cec10g1490 Cec-Chr10:29274190 Cec11g1439 Cec-Chr11:28558928 2.00E-71 dispersed
Cec11g1301 Cec-Chr11:27038773 Cec11g1439 Cec-Chr11:28558928 6.10E-14 dispersed
Cec11g1439 Cec-Chr11:28558928 Cec08g1520 Cec-Chr8:26916986 1.40E-12 dispersed
Cec11g1439 Cec-Chr11:28558928 Cec07g0942 Cec-Chr7:23247932 1.80E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1182 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01355 Cam11g1413 Cec11g1439 Cco11g1437 Clacu11g1570 Cmu11g1390 Cre11g1811 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000531 0 2 1 2 1 4 1 7 5 4 3 5 2 3 7 3 5 0 1 5 5 2 3 6 7 7 5 5 5 5 111