Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1442 ATGGAGGTTCCTCCAAAGTGGTCGTCTCCATTGGAAATCTCAAGTCTTGCCTTTGATTCCATAGCCAATGTATCAAAATTGCTAACATTTCCTTTCGCTTCACTTGTACGAGTCAACGGCCTCGCGCTTCACAATCACCAAACTTCATTAGGACCGATCCACGTTCTTCATCATTCTGCGGGAGGGAGGAAAAGAATGAAACTGACTCCAAAGGAGGTGGACAAACTAGGTCTGCATAATGCGGGATTTCTAGCACAGAAACGTCTTGCTCGTGGTTTGAGGTTGAATTGCACTGAAGCTGTAGCACTTCTTGCCACGCAGATTCTGGAGTTTGCGCGCGATGGTGATAAGAGCGTGACACAATTGATGGAACTGGGACCAAAACTCCTAGGAAGGAGACAAGTTCTTCCAGCTGTTCCACATCTTGTGGATTCTGTTCAGGTTGAAGGAACTTTTCCCGATGGGACTAAGTTAGTCACAGTTCATAAGCCCTTTGAAGAAGAAAATGGGAACCTAGAGCTAGCATTGTACGGTTCTTTTCTTCCAGTTCCTTCACCAGAAAAGTTCCCTATGATGGAAAATAGTGTGGTGCCTGGTGAGATTATCTGTCCAGATGATAAGATTTCCATTAATGTTGGACGGAGAGCTGTAAGACTCAGTGTTGTCAATAAGGGAGACAGACCAATTCAGGTTGGCAGCCACTATCACTTCATTGAGGTGAATCCTTCCTTGGTTTTTGATCGATCAAAAGCTTATGGAATGCGCCTCAACATTTCAGCAGGATCAGCTACACGGTTTGAGCCAGGGGAACCAAAATCTGTCACACTTGTAGCTATTGGTGGTAACCAAGTTATCAGAGGTGGAAATGGCATTGTCGATGGTCCAGTTCATAGTTCTAAATTGAAAGATGTGATGGAAGCTGTGCATGCAAGAGGATTTGGACATGTGGAAGAAAACAACGCTAGAGAAGGTTTCGCTGGAATAGATGATGAATTCACCACTAGACTTTCTCGTGAGGATTATGCCAACCGGTATGGTCCTACCACTGGTGACAAAGTTCGACTTGGTGATACAGATTTATATGCGGAAATTGAACATGATTTCTCTGTTTATGGAGATGAATGTGTATTTGGAGGTGGAAAAGTTATTAGAGACGGAATGGGCCAATCCTGCGGGCATCCACCAACTTTATCCCTTGATACTGTAATAACCAATGCAGTCGTCATTGATTACTGCGGAATTTTCAAGACAGATATTGGTATCAAAGATGGCTTCATTATGATCCTTGGAAAAGCTGGCAATCCTGATTGCATGGATGGTGTTTGTCCTGATCTGATTATTGGGGCTAATACTGAGGTTATTGCTGGAGAAGGATTACTGGTTACTGCAGGGGCTATAGATTGTCATGTGCATTTCATATGCCCTCAACTGGCATATGAAGCAATATCAAGCGGCATCACAACACTGGTGGGAGGTGGAACTGGGCCTGCCGCAGGAACTTGTGCTACTACTTGCACGCCATCCCCAGTGCAAATGAGGATGATGCTGCAATCAACTGATGACCTCCCCTTGAATTTTGGCTTTACTGGAACAGGGAACAGTTCAAAGCCAGATGAGCTAAGTGAAATAGTACGCGCTGGAGCAATGGGGCTGAAGCTACATGAAGATTGGGGAACTACTCCTGCTGCAATTGACAATTGTTTAACTATGGCAGAAAAATATGATATTCAGGTGAATATTCACACTGACACTCTGAATGAGTCTGGATTTGTGGAACATACAATTGCAGCTTTTAAGGGAAGAACAATACACACATACCACAGTGAAGGAGCTGGAGGTGGTCATGCTCCAGATATCATTCGAGTATGTGGTGTGAAAAATGTGCTGCCTTCATCAACTAATCCTACACGACCATTCACGATCAACACTGTAGATGAACACCTTGACATGCTGATGGTGTGCCATCATCTCGATCGCAATATTAAAGAAGACGTAGCTTTTGCGGAATCAAGGATAAGGAAGGAGACAATTGCTGCAGAAGATATTTTGCATGATATGGGGGCAATCAGTATCATATCTTCTGATTCACAGGCTATGGGTCGCATAGGCGAGGTTATTTCAAGAACATGGCAAACTGCACACAAAATGAAGTTGGAAAGACCACCTTCATCAGACAATGACAACTTGCGGATCAAGCGATATATATCCAAATATACCATAAATCCAGCCATAGCAAACGGGTTTTCTCAGTATGTTGGTTCAGTAGAGGTAGGGAAGTTGGCTGACCTTATTCTCTGGAAGCCGGCCTTTTTTGGGGCAAAACCAGAAATGGTGATTAAAGGTGGTATAGTTGCTTGGGCAAACATGGGTGATCCAAATGCAAGCATACCTACTCCTGAACCGGTATTGATGAGACCAATGTTTGGATCTTTTGGAAAGGCTGGAAGTGCGAACTCAATTGCCTTTGTCAGCAAGGAAGCTGTTAACGCCGGAGTTAAAGCCATGTACGGACTCAAAAAGAGAGTTGAAGCTGTAGGCAACGTTAGGAAGCTCACTAAACTTGACATGAAGTGGAATGATGCCCTTCCACTTATCGAAGTAGATCCCGAAACATACACAGTGAAAGCCGATGGCAAAGTTCTTACCTGCGAGCCCGCCACTTCTGTTCCACTTTCTCAAAATTACTTCCTTTTCTAG 2697 44.05 MEVPPKWSSPLEISSLAFDSIANVSKLLTFPFASLVRVNGLALHNHQTSLGPIHVLHHSAGGRKRMKLTPKEVDKLGLHNAGFLAQKRLARGLRLNCTEAVALLATQILEFARDGDKSVTQLMELGPKLLGRRQVLPAVPHLVDSVQVEGTFPDGTKLVTVHKPFEEENGNLELALYGSFLPVPSPEKFPMMENSVVPGEIICPDDKISINVGRRAVRLSVVNKGDRPIQVGSHYHFIEVNPSLVFDRSKAYGMRLNISAGSATRFEPGEPKSVTLVAIGGNQVIRGGNGIVDGPVHSSKLKDVMEAVHARGFGHVEENNAREGFAGIDDEFTTRLSREDYANRYGPTTGDKVRLGDTDLYAEIEHDFSVYGDECVFGGGKVIRDGMGQSCGHPPTLSLDTVITNAVVIDYCGIFKTDIGIKDGFIMILGKAGNPDCMDGVCPDLIIGANTEVIAGEGLLVTAGAIDCHVHFICPQLAYEAISSGITTLVGGGTGPAAGTCATTCTPSPVQMRMMLQSTDDLPLNFGFTGTGNSSKPDELSEIVRAGAMGLKLHEDWGTTPAAIDNCLTMAEKYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIRVCGVKNVLPSSTNPTRPFTINTVDEHLDMLMVCHHLDRNIKEDVAFAESRIRKETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKLERPPSSDNDNLRIKRYISKYTINPAIANGFSQYVGSVEVGKLADLILWKPAFFGAKPEMVIKGGIVAWANMGDPNASIPTPEPVLMRPMFGSFGKAGSANSIAFVSKEAVNAGVKAMYGLKKRVEAVGNVRKLTKLDMKWNDALPLIEVDPETYTVKADGKVLTCEPATSVPLSQNYFLF 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28585401 28596504 + CePI673135_11g014420.1 Cec11g1442 216654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1442 898 Gene3D Urease, subunit C, domain 1 337 811 IPR011059 GO:0016810(InterPro)
Cec11g1442 898 Gene3D - 464 898 - -
Cec11g1442 898 Gene3D Urease, beta subunit 196 326 IPR036461 -
Cec11g1442 898 FunFam Urease subunit alpha 69 189 - -
Cec11g1442 898 ProSiteProfiles Urease domain profile. 464 898 IPR017951 GO:0009039(InterPro)|GO:0016151(InterPro)
Cec11g1442 898 PRINTS Urea amidohydrolase (urease) protein signature 630 647 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cec11g1442 898 PRINTS Urea amidohydrolase (urease) protein signature 732 747 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cec11g1442 898 PRINTS Urea amidohydrolase (urease) protein signature 758 771 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cec11g1442 898 PRINTS Urea amidohydrolase (urease) protein signature 669 685 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cec11g1442 898 SUPERFAMILY Composite domain of metallo-dependent hydrolases 335 512 IPR011059 GO:0016810(InterPro)
Cec11g1442 898 FunFam Urease 214 332 - -
Cec11g1442 898 ProSitePatterns Urease active site. 652 668 IPR017950 GO:0009039(InterPro)
Cec11g1442 898 Hamap Urease subunit beta [ureB]. 196 296 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Cec11g1442 898 Hamap Urease subunit alpha [ureC]. 334 898 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cec11g1442 898 SUPERFAMILY Metallo-dependent hydrolases 464 898 IPR032466 -
Cec11g1442 898 NCBIfam urease subunit beta 197 296 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Cec11g1442 898 SUPERFAMILY Urease, beta-subunit 197 324 IPR036461 -
Cec11g1442 898 NCBIfam urease subunit alpha 336 898 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cec11g1442 898 Pfam Urease beta subunit 198 294 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Cec11g1442 898 ProSitePatterns Urease nickel ligands signature. 462 475 IPR029754 GO:0016151(InterPro)
Cec11g1442 898 Pfam Urease alpha-subunit, N-terminal domain 335 454 IPR011612 -
Cec11g1442 898 Pfam Amidohydrolase family 460 784 IPR006680 GO:0016787(InterPro)
Cec11g1442 898 CDD Urease_beta 196 296 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Cec11g1442 898 PANTHER UREASE 66 898 IPR050069 -
Cec11g1442 898 Pfam Urease subunit beta-alpha linker domain 296 329 IPR040881 -
Cec11g1442 898 CDD Urease_alpha 335 897 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cec11g1442 898 SUPERFAMILY Urease, gamma-subunit 66 169 IPR036463 GO:0016151(InterPro)|GO:0043419(InterPro)
Cec11g1442 898 SUPERFAMILY Composite domain of metallo-dependent hydrolases 740 810 IPR011059 GO:0016810(InterPro)
Cec11g1442 898 Gene3D - 69 189 IPR036463 GO:0016151(InterPro)|GO:0043419(InterPro)
Cec11g1442 898 CDD Urease_gamma 69 165 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Cec11g1442 898 Pfam Urease, gamma subunit 66 164 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Cec11g1442 898 NCBIfam urease subunit gamma 66 166 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1442 K01427 - - csv:101209590 1570.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec11g1441 Cec-Chr11:28572767 Cec11g1442 Cec-Chr11:28585401 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49