Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1475 ATGGGTGTGGGTGAGATAGCTCTCTCCCTCTTTTCCCTTCCGCTTTTGCTTTGTGTTCCTGTTCTCTGCCGTTTAAGCCGCGGTCGAGAGATGGCAGAGGGAAGCGATTTCAGGCATTGGGACGAGCTAATACCAGACGCTTTGGGGCTAATCTTCAGTAAACTTTCACTCCAAGAGAAACTCACCGTTATTCCTAGGGTCTGCAAATCATGGGCCAAATTAGTACTCGGACCTTACTGCTGGCAAGAGATTGATATTGAAGAATGGAGCAGTCGAAGGCAACTCGACAATGTTGATCGAATGCTTCAAATGCTGATAAATCGAAGTGGCGGGTCGCTACGCAAGCTCTGCGTTACTGGTCTTCATAACAGCAGCATTTTCTTCTCCATCGCTGATCATGCTGGTTCTCTTCAAACATTGCGACTGCCAAGGAGCAATATAAGCGATGCTGTAGCAGAACAAATTGCCGGAAGGCTTTGTGCAGTTACTTTTTTGGATCTAAGCTATTGTGATAAAATCAGTGCCTGTGGTTTAGAGTCCATAGGAAAGAATTGCAAAGCTTTAGTTGGAATGTGTCGTAACTTGCATCCGCTACATACAGCAGGTATATCCTCCCCGGACGATGAAGCTTATACTATTGCAGCTACAATGCCGAAACTCAAGCATCTTGAAATGGCTTATCACCCTCTTAGCACCAAAAGTTTACTGACAATACTTTCAAGCTGCCCCAACCTCGAGTTCCTCGATTTGAGAGGGTGTTGGGATGTAAGGCTAGAAGACAAGTTTCTTGCAGAGAAGTTCCCAAAACTAAGAGTTTTGGGGCCTCTCGTTAGGGACGTCTACGAGAGAAATGAATGGGATGAAGGCTCAGACTACTCATACATATCAGACGACTTGGCATGGGACTTTTCTGCAGATTACTTCGACGATGCTGGTAGTTACGACGATCCATGGGACGATGAATGCAGACTAGAAGGACTAGAGTTGAGATTTTATGAAGGAATTGATGAAGATAATGAAGCCTTTGGTTGGCCTGCCTCCCCTTAA 1047 45.56 MGVGEIALSLFSLPLLLCVPVLCRLSRGREMAEGSDFRHWDELIPDALGLIFSKLSLQEKLTVIPRVCKSWAKLVLGPYCWQEIDIEEWSSRRQLDNVDRMLQMLINRSGGSLRKLCVTGLHNSSIFFSIADHAGSLQTLRLPRSNISDAVAEQIAGRLCAVTFLDLSYCDKISACGLESIGKNCKALVGMCRNLHPLHTAGISSPDDEAYTIAATMPKLKHLEMAYHPLSTKSLLTILSSCPNLEFLDLRGCWDVRLEDKFLAEKFPKLRVLGPLVRDVYERNEWDEGSDYSYISDDLAWDFSADYFDDAGSYDDPWDDECRLEGLELRFYEGIDEDNEAFGWPASP 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28960256 28963530 + CePI673135_11g014750.1 Cec11g1475 216687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1475 348 SUPERFAMILY RNI-like 66 273 - -
Cec11g1475 348 Pfam F-box domain 40 82 IPR001810 GO:0005515(InterPro)
Cec11g1475 348 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 37 288 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Cec11g1475 348 FunFam F-box protein FBW2 39 81 - -
Cec11g1475 348 Gene3D Ribonuclease Inhibitor 35 276 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1475 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0893 Cec-Chr10:19787030 Cec11g1475 Cec-Chr11:28960256 6.40E-79 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g435 . . . . Bpe02g00115 . . . . . Cma01g01614 Cma09g00566 . . . Cpe06g00430 . . . . . . . . . . . . . . . . . Cone17ag1208 Cone20ag0517 Lsi04g02245 Csa03g04456 Chy04g00246 . . . Bda11g00772 . . Bpe14g00460 . Bma02g00135 . Cmo01g01660 . . . . . . Cpe02g00366 Bhi09g02449 . . . . . . Cla11g01391 Cam11g1447 Cec11g1475 Cco11g1472 Clacu11g1606 Cmu11g1425 Cre11g1845 . . . Cme04g00275
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002091 1 4 1 1 2 1 3 1 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 2 6 3 1 62