Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1483 ATGGCGCTCCGTTTTGAGATTATGGGAAGATTTAATCGTGCTCGTGCTGCACGACTCACTCTCCCCCACTTTATCTGCCAAACACCTCTGTTTATGCCAGTGGGAACACAAGGGACAATTAAAGGGTTGACAACTCAGCAGCTTGAAGAGATTGGTTGCCAAATTATACTTGGAAATACATATCATTTAGCACTTCGTCCCACTTCCGAGCTTATTGATGAATTGGGAGGTCTCCACAAGTTTATGAACTGGCCCAGAGCAATGCTTACCGATTCTGGCGGGTTTCAAATGGTTTCATTGTTACATTTAGCTGATATCACCGAAAAAGGTGTAACATTTCAGTCTCCAGTTGATGGGAAGCCAATGCTTTTGACTCCTGAGGAATCAATTCAAATTCAAAACAGAATAGGAGCAGATATTATTATGGCTCTTGATGATGTAGTAAAAACAACCATTACAGGTCCAAGAATTGAGGAGGCCATGTACCGTACTCTTCGTTGGATAGACAGATGTATAGCAGCACACAAGAGACCTCATGAGCAGAATTTATTTGGTATTGTGCAAGGTGGTTTGGATCCAGTCCTAAGGGACATATGCGTTAGAGGCTTGGTTGACCGAAATTTACCAGGGTATGCGATTGGCGGTCTGGCAGGTGGTGAAGATAAAGATTCATTTTGGCGTGTTGTTGCCCAATGCACTGCTTCACTGCCTGAGGACAAACCTAGATATGTTATGGGTGTTGGCTATCCACTGGACATTGTCGTATGTAGTGCTTTAGGTGCCGACATGTATGACTGTGTTTATCCAACCCGTACTGCTCGTTTTGGCACAGCACTCATACCTGAGGGAGTTCTAAAACTAAAACACCAAGCGATGGCTGATGATACTCGTCCCATTGATCCTACATGTGATTGCATGGTCTGCAGGAACTATACTAGGGCCTACATCCATTGTCTTGTTACAAAAGATGCTATGGGTTCTCAGCTACTCTCATTTCACAATTTGTATTACATGATGAAGCTTAGCAGAGATCTACATTCTTCAATTGTTCAGGGGCAATTCCCAGAGTTCGTTCGCAAGTTCTTGCTGAGAATGTTCCCTCAGGGCGATGTCCCGCAATGGGTCTGCAATGCTATGGAGGTTGCCGGATTAAAACCAAACCAAAATTGGTCAGTGATAATGAAGAGATTTGCCCACTCAGATTCCTTGGATTCTTTCATCACCATCTTCTCCCCTAATGATCAACCGAGCTCCAAAACCATAGGCGGCTACAGCAAGGAGTTTCAAGCAATGTTAGACAGTTTGGAGGAAGAAGACAACAGCGAAGACGGCGGCAACGGTGGCGGGTCAGCACCGGAGAGAAAACGGCGGCTGAAGGTGGAGCAAGTGAAGGTCTTGGAGAGGCATTTTGAAGTGGAAAACAAGTTAGAACCAGAGAGAAAAATGAAGATTGCAGCTGAATTAGAGCTTGAACCAAAGCAAGTTACAATTTGGTTCCAAAATCGCAGAGCCCGTTGGAAAACAAAGCAATTAGAGAGAGATTATGGAGTTCTTAAAGTCAATTACGATGCTCTTAAACTGGACTATGATGTTCTTGAGAAAGAGAATGCTTCTCTTGCTTCAAAGGTCAAAGAGTTGAGGGAAAAAGTAAGGAGAGAAGGAACAGAGATGAAAATTCAAAGAGAAGTGAAAAATGGGTCAGTGGAGAGAGATTCAAACAGAGATGGGAATTCATATATTTCCATGTTGAATTGCTTTGAATTTTCTGGGAAAGTTTATGAGAATCAAACCCAGTTTACAAAGGCAATGAATGATGATGATGATGATCAAAGTTTGGTTAATATAGAAGAGCCTTGCAATTTCTGTTCTGTTGATCAAGCTCCCTCTCTCCACTGTGGAAATCAACGCATAAAAAGGAATGAAAAAAGAAAAAAAGAAAAACTTGTGGACCCCATTCTTGGTTTTTGTTTGCCAAAAATCGATTTTTAA 1989 42.38 MALRFEIMGRFNRARAARLTLPHFICQTPLFMPVGTQGTIKGLTTQQLEEIGCQIILGNTYHLALRPTSELIDELGGLHKFMNWPRAMLTDSGGFQMVSLLHLADITEKGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRIEEAMYRTLRWIDRCIAAHKRPHEQNLFGIVQGGLDPVLRDICVRGLVDRNLPGYAIGGLAGGEDKDSFWRVVAQCTASLPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALIPEGVLKLKHQAMADDTRPIDPTCDCMVCRNYTRAYIHCLVTKDAMGSQLLSFHNLYYMMKLSRDLHSSIVQGQFPEFVRKFLLRMFPQGDVPQWVCNAMEVAGLKPNQNWSVIMKRFAHSDSLDSFITIFSPNDQPSSKTIGGYSKEFQAMLDSLEEEDNSEDGGNGGGSAPERKRRLKVEQVKVLERHFEVENKLEPERKMKIAAELELEPKQVTIWFQNRRARWKTKQLERDYGVLKVNYDALKLDYDVLEKENASLASKVKELREKVRREGTEMKIQREVKNGSVERDSNRDGNSYISMLNCFEFSGKVYENQTQFTKAMNDDDDDQSLVNIEEPCNFCSVDQAPSLHCGNQRIKRNEKRKKEKLVDPILGFCLPKIDF 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29044288 29056162 - CePI673135_11g014830.1 Cec11g1483 216695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1483 662 Gene3D - 1 366 IPR036511 GO:0006400(InterPro)|GO:0016763(InterPro)
Cec11g1483 662 NCBIfam tRNA guanosine(34) transglycosylase Tgt 5 364 IPR004803 GO:0008479(InterPro)|GO:0101030(InterPro)
Cec11g1483 662 Hamap Queuine tRNA-ribosyltransferase [tgt]. 3 364 IPR004803 GO:0008479(InterPro)|GO:0101030(InterPro)
Cec11g1483 662 Pfam Homeodomain 455 507 IPR001356 GO:0003677(InterPro)
Cec11g1483 662 CDD homeodomain 454 510 IPR001356 GO:0003677(InterPro)
Cec11g1483 662 SUPERFAMILY Homeodomain-like 444 511 IPR009057 -
Cec11g1483 662 SMART HOX_1 452 513 IPR001356 GO:0003677(InterPro)
Cec11g1483 662 ProSiteProfiles 'Homeobox' domain profile. 449 509 IPR001356 GO:0003677(InterPro)
Cec11g1483 662 Coils Coil 522 549 - -
Cec11g1483 662 SUPERFAMILY tRNA-guanine transglycosylase 1 362 IPR036511 GO:0006400(InterPro)|GO:0016763(InterPro)
Cec11g1483 662 ProSitePatterns 'Homeobox' domain signature. 484 507 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec11g1483 662 NCBIfam tRNA-guanine transglycosylase 5 364 IPR002616 GO:0006400(InterPro)|GO:0016763(InterPro)
Cec11g1483 662 PANTHER QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 2 385 - GO:0005829(PANTHER)|GO:0008479(PANTHER)|GO:0101030(PANTHER)
Cec11g1483 662 Pfam Homeobox associated leucine zipper 509 550 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec11g1483 662 Gene3D - 445 514 - -
Cec11g1483 662 MobiDBLite consensus disorder prediction 436 456 - -
Cec11g1483 662 Pfam Queuine tRNA-ribosyltransferase 13 364 IPR002616 GO:0006400(InterPro)|GO:0016763(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1483 K00777 - - csv:101206917 779.245
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0860 Cec-Chr10:18362584 Cec11g1483 Cec-Chr11:29044288 6.30E-32 dispersed
Cec10g1449 Cec-Chr10:28823661 Cec11g1483 Cec-Chr11:29044288 4.50E-23 dispersed
Cec10g1968 Cec-Chr10:34472096 Cec11g1483 Cec-Chr11:29044288 1.70E-15 dispersed
Cec11g1483 Cec-Chr11:29044288 Cec04g1557 Cec-Chr4:35024362 6.20E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g449 . . . . . . . . . . Cma01g01625 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02252 Csa03g04463 Chy04g00238 . . . . . . . . . . Cmo01g01669 . . . . . . Cpe02g00358 Bhi09g02462 Tan01g3812 . . Hepe01g2145 . . Cla11g01398 Cam11g1455 Cec11g1483 Cco11g1480 Clacu11g1614 Cmu11g1433 Cre11g1853 . . . Cme04g00266
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005915 1 2 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 6 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30555 PF01702 TGT 1.00E-147 No_clan Cec TF