Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1528 ATGAAAAACAGTAAATTTTTTCCCTCAATTTTATTTTGCGTTTTCTCTTCTTTTTCCTTTTACTTTTACGCGCCCTTCATTTCTGCAACAACAACAATACCAAAGCCTCCTCGCCAGTTTTCTTCTTCATGGCCGCCGAACGCTGCCTCGCCGGCCGCCGCCGCACCTCCTCCGCTGCAACTACGGATTCACGACCAACATGTTGTGATGGACAATGGCATAATCGGAGTCAACTTGTCGAACCCAATGGGCATGGTCATTGGAATACAGTACAAAGGGATTGAAAACTTGCTTGAAGTTGACAATTCTGAAGATGATAGAGGATATTGGGACATCGTTTGGAATGTGGCAGGAAGTTCAGGAACCAAGGGCATTTTTGATCGAATTGAAGCAACAGATTTCAAGGTAATTGTAGAAAATGATGAACAAATTGAACTCTCATTCAGCAGAACTTACAATTCATCCATCGGACGCGACCTCATTCCCTTGAATATCGACAAAAGGTTCGTGATGCTTCGTAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGAATGGCCTGCGTTTATCATCGACAACACCAGAATCGTATTCAAGCTCCGAAAAGACAAGTTTCGTTACATGGCTGTAGCAGATAAGAGACAGAGATTCATGCCTTTACCCGACGATCGGAAGCCACCGCGAGGGGAAGCCCTGGCTTATCCGGAGGCCGTCCTTCTTCTCGATCCTATCGAACCAGAGCTCAAGGGAGAGGTGGATGACAAGTACCAATACGGCTGCGAAAGCAAAGACGCTCGGGTTCACGGGTGGATATCCACCGACCCGCCCATTGGCCTTTGGCAAATCTCACCGACCGAGGAGTTTCGCTCCGGTGGGCCCCTGAAACAGTTTCTCACTTCCCATGTCGGTCCCACAACCCTTACTGTTTTTCATAGCGCTCATTACGCAGGAGAGGATATGGTTGTAAAGTTCGGTGGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTATCTTTATCCATCTTAATTCCTTGCCTGAAGGAGAGGATCCCCTTAGACTCTGGCAAAATGCTAAAGAACAGATGATGACTGAAGTTCAAAGCTGGCCTTACGGTTTCCTTGCTTCTGAGGATTTTCTCAAATCCGATCAACGAGGCACCGTCAGCGGCAGATTGATAATCCGGGAGAGATTTGTGAGTGATGAATCTGTGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGAGAACTTGGCTCTTGGCAAACCGAAAGCAAGGGCTACCAATTCTGGACTAGGGCAGATCAGAATGGTTCTTTCTCTTTGAATAATGTTCGCAGTGGAAATTATAGTCTTTATGGATGGGTCCCCAATTTTATCGGCAATTACCAATACAATCGTTTCATCACTGTAACCCCAGGCAGTGATATCAATGTGGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACATTGTGGGAAATAGGCATTCCTGACCGTACTGCTGCAGAATTCTATGTACCGGATCCTAATCCAAAGTATATTAATAAACTTTATGTCAATCATTCAGATAGGTTTAGGCAGTATGGATTATGGGAAAGGTACGGAGAGTTATATCCTGATAAGGATCTAGTTTATACAGTCGGGCTTAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGATAGGGGACAACAAATATGCTGGAACTACCTGGAAAATTAAGTTCCAACTTGACAGTCCGGATACACATGGAACATATAGGCTGCGTCTTGCATTGGCTACTGCACATGCTGCAGAATTACAAGTTCGACTGAATGATGCACAAGCAGTTCCTCCATTATTCACAACTGGATTGATTGGAATGGACAATACTATAGCTAGACATGGAATCCATGGTCTCTATCGGCTGTACGCGGTTGACATTCCGGGCAGTAAGCTTGTGAGCATAAGAGGGTCACTCCTCTCCTATCAGTTCCAACCAGTAGAGATTGACACCTTCCTTGGCTTGGTAGTTATGGACAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGTTGATGATAAGGAAGCTCATAGAGGGTACTGGGACCTCGTGTGGAACTCTGGGACTCTGGGAACGACGGGAACATTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATGGTGCAAAATGAGGAACAAATAGAGCTCTCATTTAAAAGGAATTATTCATTCAAGGACAAGTCTGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGCAACTCCTCTGGGTTCTACTCCTATGCCATCTATGAGCACATGAAGGAATGGCCACCATTCAACCTTCCTCAAACAAGGATTGTGTTTAAGCTACGAAAGGACAAGTTTCATTATATGGCCATAGCAGATGACAGACAGAGATTCATGCCACTTCCCGAGGATAGACTACGTCACAGAGGAAAACCTTTGGATTTTCCAGAGGCTGTATTGCTAGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTGGATGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCGGTGGGTTTCTGGCAAATCACTCCAAGCAGTGAGTTCAGATCAGGCGGACCCCTCAAACAGAACCTTACCTCTCATGTGGGCCCATATACTCTTGCTATGTTTCTTAGCGCTCACTATTCAGGAGAGGACTTGGTGCTGAAGCTCAGTCCTGATGAGCCGTGGAAGAAAGTTTTTGGCCCTGTATTTTTCTATCTAAATTCTGTTTCTGATGGAGGCGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGACGAAGGAAGTTCAAAGCTGGCCCTATTCTTTTCCGGCTTCTGAGGATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGCAAATTATTTGTCCTTGACAGACATGTTAACCAAGAGCAAATGCCGGCTACTGACGCGTATGTGGGACTGGCAGCACCAGGAGATGTTGGATCATGGCAGACCGAAAACAAGGGTTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCATTTAGCATTGAACACGTACGCATCGGCGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTATGATGCTATCATTAGTGTATCTGCAGGTAGTGATATGGACATAAGTGATCTTGTTTATGAGCCACCTAGGAATGGGCCCACATTGTGGGAAATAGGCATTCCCGATCGCTATGCTGCTGAATTCTATGTTCCTGATCCTGATCCAAAGTACATAAACAAATTGTATGTCAATCATCCGGATAGATTTAGGCAATATGGACTGTGGGAAAAATATGCTGAGTTATATCCTGATTCAGACTTAGTATATACAGTTGGTGTTAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTAATCGAACGAAAAATGATGGATCCCATTTAGCAACCACTTGGGAAATCAAGTTTACACTTGATAATGTCATAGATAAGAGCGGCACCTATACATTACGAGTGGCTTTGGCCACTGCCAATGTTGCCGAATTACAG 3663 44.31 MKNSKFFPSILFCVFSSFSFYFYAPFISATTTIPKPPRQFSSSWPPNAASPAAAAPPPLQLRIHDQHVVMDNGIIGVNLSNPMGMVIGIQYKGIENLLEVDNSEDDRGYWDIVWNVAGSSGTKGIFDRIEATDFKVIVENDEQIELSFSRTYNSSIGRDLIPLNIDKRFVMLRNSSGFYSYAIYEHLKEWPAFIIDNTRIVFKLRKDKFRYMAVADKRQRFMPLPDDRKPPRGEALAYPEAVLLLDPIEPELKGEVDDKYQYGCESKDARVHGWISTDPPIGLWQISPTEEFRSGGPLKQFLTSHVGPTTLTVFHSAHYAGEDMVVKFGGNEPWKKVFGPIFIHLNSLPEGEDPLRLWQNAKEQMMTEVQSWPYGFLASEDFLKSDQRGTVSGRLIIRERFVSDESVPASGAYVGLALPGELGSWQTESKGYQFWTRADQNGSFSLNNVRSGNYSLYGWVPNFIGNYQYNRFITVTPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHSDRFRQYGLWERYGELYPDKDLVYTVGLSDYRKDWFFAQVTRKIGDNKYAGTTWKIKFQLDSPDTHGTYRLRLALATAHAAELQVRLNDAQAVPPLFTTGLIGMDNTIARHGIHGLYRLYAVDIPGSKLVSIRGSLLSYQFQPVEIDTFLGLVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKEAHRGYWDLVWNSGTLGTTGTFDEMRGKEFEVMVQNEEQIELSFKRNYSFKDKSVPLNIDKRFIMLRNSSGFYSYAIYEHMKEWPPFNLPQTRIVFKLRKDKFHYMAIADDRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYTLAMFLSAHYSGEDLVLKLSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMTKEVQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRHVNQEQMPATDAYVGLAAPGDVGSWQTENKGYQFWTKTDADGSFSIEHVRIGDYNLYAWVPGFIGDYRYDAIISVSAGSDMDISDLVYEPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDSDLVYTVGVSDYTKDWFFAHVNRTKNDGSHLATTWEIKFTLDNVIDKSGTYTLRVALATANVAELQ 1221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29520212 29535956 - CePI673135_11g015280.1 Cec11g1528 216740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1528 1221 FunFam Rhamnogalacturonate lyase B 993 1092 - -
Cec11g1528 1221 SUPERFAMILY Galactose mutarotase-like 683 956 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cec11g1528 1221 SUPERFAMILY Starch-binding domain-like 384 484 IPR013784 GO:0030246(InterPro)
Cec11g1528 1221 Gene3D - 494 681 - -
Cec11g1528 1221 Gene3D - 1103 1220 - -
Cec11g1528 1221 Pfam Polysaccharide lyase family 4, domain II 410 482 IPR029413 -
Cec11g1528 1221 Pfam Polysaccharide lyase family 4, domain II 1020 1090 IPR029413 -
Cec11g1528 1221 SUPERFAMILY Galactose-binding domain-like 493 657 IPR008979 -
Cec11g1528 1221 CDD RGL4_N 680 966 - -
Cec11g1528 1221 Pfam Rhamnogalacturonate lyase family 52 256 IPR010325 -
Cec11g1528 1221 Pfam Rhamnogalacturonate lyase family 677 865 IPR010325 -
Cec11g1528 1221 SUPERFAMILY Starch-binding domain-like 993 1092 IPR013784 GO:0030246(InterPro)
Cec11g1528 1221 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 676 1221 IPR051850 -
Cec11g1528 1221 CDD RGL4_N 61 347 - -
Cec11g1528 1221 Gene3D - 384 484 - -
Cec11g1528 1221 Gene3D - 993 1093 - -
Cec11g1528 1221 SUPERFAMILY Galactose-binding domain-like 1102 1220 IPR008979 -
Cec11g1528 1221 Gene3D - 682 936 IPR014718 GO:0030246(InterPro)
Cec11g1528 1221 Gene3D - 61 339 IPR014718 GO:0030246(InterPro)
Cec11g1528 1221 CDD RGL4_C 498 669 - -
Cec11g1528 1221 Pfam Polysaccharide lyase family 4, domain III 1105 1220 IPR029411 -
Cec11g1528 1221 Pfam Polysaccharide lyase family 4, domain III 496 658 IPR029411 -
Cec11g1528 1221 CDD RGL4_M 387 486 IPR029413 -
Cec11g1528 1221 FunFam Rhamnogalacturonate lyase B 384 483 - -
Cec11g1528 1221 CDD RGL4_M 996 1095 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec11g1528 Cec-Chr11:29520212 Cec11g1529 Cec-Chr11:29542643 7.50E-248 tandem
Cec11g1528 Cec-Chr11:29520212 Cec04g1520 Cec-Chr4:34722312 4.50E-200 wgd
Cec11g1528 Cec-Chr11:29520212 Cec08g1183 Cec-Chr8:23723706 1.50E-251 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1528 K18195 - csv:101203789 1110.13