Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec11g1529 ATGTCATCCAGATCAGGCGTCCGATTGCAGATACGAGATCATCATGTGGTAGTGGATAATGGAATACTGCAACTAACCTTATCAAAACCTGATGGAATTATCACTGGCATACGATATAATGGTGTTGACAATCTGCTTGAAGTTCTTAACCCTGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAATTCTCCAGGGAGCAAGGGAATATTTGATGTGATTAAAGGGTCAAATTTTAGGGTTGTAGTGGAAAATGAGGAACAGGTCGAACTGTCTTTTACGAGGATGTGGGATCCCTCCCTCGAGGGCAAGTTCGTTCCTTTAAATATTGACAAAAGGTTCATAGTACTACGCGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAACACTTGAAGGGTTGGCCTGATTTTGATATTGGCGAAACCAGGATCACTTTTAAACTTAGAAAAGACAAGTTCCAGTACATGGCTGTAGCTGACAATAGGCAGAGAGTCATGCCTCTGCCCGATGATCGGTTATCTGGAAGATGCCAAACTTTGGCCTACCCTGAAGCTGTCTTGCTGACTAATCCCAAGAACCCTGAACTCAAGGGTGAGGTGGATGACAAATACCAATACTCATGTGAAAACATAGACTTAAAGGTTCATGGATGGATATGCACCAATCCACCCACCGGGTTTTGGCAGATTACTCCCAGTGATGAATTCCGGTCAGGGGGGCCTCTTAAGCAAAGTCTAACGTCACACGTGGGACCTACAACCCTTGCTATATTTCTCAGTACTCATTATGCGGGACAAGATTTAGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTCTATCTCAATTCCACCTCAGTTGGAGATGATCCGTTTTGGTTATGGGAGGATGCTAAAATTCAGATGATGGCGGAAGTCGAAAGTTGGCCTTATAGTTTCCCTGCATCTGAGGATTTCCCAAAAGTAGATCAACGGGGTATTGTTAGTGGTCGGCTACTGGTTTTTGACAGGTATGTGAGTCAAGACTATCTTCCAGCCAGTGGAGCCTTCGTCGGATTGTCTGCACCAGGAGAAGTGGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCAGATGATGGTGGTTATTTTACCATCAACCACATACACACTGGCTACTACAATTTATATGCATGGGTCCCTGGCTTCGTTGGAGATTACCGTTGTGACGCCCTCATCAACGTAAACCAAGGATCTTGTATTGAAATGGGCGATATTGTATATGAACCTCCAAGAGATGGGCCCACACTATGGGAAATAGGCATTCCCGATCGCTCTGCGTCTGAGTTCTATGTTCCTGATCCTAATCCAATTCATATTAATAAGCTCTTTGTCAACCATCCTGACAGGTTCCGGCACTATGGGTTGTGGGACAGATATGCTGAATTATACCCGGACGAGGATTTAGTGTACACTGTTGGTACAAGTGACTATACCAAAGATTGGTTCTTTGCTCAGGTTCCTAGGAAGAAAAACAGTAATTCACATGAAGGAAGTACTTGGCAAATCAAATTCAAACTTGATAGAGTGGATCACAAGAATATGTATACACTACGGGTTGCAATTGCATCTGCTACTCTTGCTGAATTGCAGGTCCGGGTAAATGATCCGAGATCGAAGCGACCTTTGTTCACGAGCGGATTGATAGGGAGAGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTACAGCGTGGGCATAGCAGGCTGTCATCTTGTTGAAGGAGATAACATAATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTCCAACAAAGTGA 1908 44.03 MSSRSGVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGIFDVIKGSNFRVVVENEEQVELSFTRMWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKGWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTLAYPEAVLLTNPKNPELKGEVDDKYQYSCENIDLKVHGWICTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFWLWEDAKIQMMAEVESWPYSFPASEDFPKVDQRGIVSGRLLVFDRYVSQDYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTINHIHTGYYNLYAWVPGFVGDYRCDALINVNQGSCIEMGDIVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPIHINKLFVNHPDRFRHYGLWDRYAELYPDEDLVYTVGTSDYTKDWFFAQVPRKKNSNSHEGSTWQIKFKLDRVDHKNMYTLRVAIASATLAELQVRVNDPRSKRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGCHLVEGDNIIFLTQPRCTSPFQGIMYDYIRLEGPPTK 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29542643 29549582 - CePI673135_11g015290.1 Cec11g1529 216741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec11g1529 635 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 633 IPR051850 -
Cec11g1529 635 CDD RGL4_C 443 630 - -
Cec11g1529 635 Pfam Polysaccharide lyase family 4, domain II 355 426 IPR029413 -
Cec11g1529 635 SUPERFAMILY Starch-binding domain-like 332 426 IPR013784 GO:0030246(InterPro)
Cec11g1529 635 Pfam Rhamnogalacturonate lyase family 3 201 IPR010325 -
Cec11g1529 635 CDD RGL4_N 15 294 - -
Cec11g1529 635 Gene3D - 439 630 - -
Cec11g1529 635 CDD RGL4_M 332 431 IPR029413 -
Cec11g1529 635 Pfam Polysaccharide lyase family 4, domain III 441 629 IPR029411 -
Cec11g1529 635 Gene3D - 8 305 IPR014718 GO:0030246(InterPro)
Cec11g1529 635 SUPERFAMILY Galactose mutarotase-like 13 297 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cec11g1529 635 SUPERFAMILY Galactose-binding domain-like 438 630 IPR008979 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1520 Cec-Chr4:34722312 Cec11g1529 Cec-Chr11:29542643 2.30E-225 dispersed
Cec04g1896 Cec-Chr4:37448438 Cec11g1529 Cec-Chr11:29542643 1.80E-197 dispersed
Cec08g1183 Cec-Chr8:23723706 Cec11g1529 Cec-Chr11:29542643 8.40E-283 dispersed
Cec10g0821 Cec-Chr10:15293925 Cec11g1529 Cec-Chr11:29542643 7.90E-231 dispersed
Cec11g1528 Cec-Chr11:29520212 Cec11g1529 Cec-Chr11:29542643 7.50E-248 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec11g1529 K18195 - csv:101203947 1266.52